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AT3G28940.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
cytosol 1.000
ASURE: cytosol
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31186290 (2019): cytosol None
  • PMID:30783145 (2019): extracellular region plant-type cell wall
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:26572690 (2016): extracellular region plant-type cell wall
  • PMID:24124904 (2013): plastid
  • PMID:23673981 (2013): plastid plastid stroma plastoglobules
  • PMID:17644812 (2007): plasma membrane
  • PMID:17317660 (2007): plasma membrane
  • PMID:15574830 (2004): plasma membrane
  • PMID:15028209 (2004): plastid
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : AIG2-like (avirulence induced gene) family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
AIG2-like (avirulence induced gene) family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to bacterium; LOCATED IN: plasma membrane, chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: AIG2-like (InterPro:IPR009288); BEST Arabidopsis thaliana protein match is: AIG2-like (avirulence induced gene) family protein (TAIR:AT3G28930.1); Has 239 Blast hits to 239 proteins in 73 species: Archae - 4; Bacteria - 41; Metazoa - 0; Fungi - 57; Plants - 104; Viruses - 0; Other Eukaryotes - 33 (source: NCBI BLink).
Protein Annotations
DNASU:822530eggNOG:ENOG410J20XeggNOG:ENOG410XV5JEMBL:AB025615
EMBL:AF410281EMBL:AY102134EMBL:CP002686EnsemblPlants:AT3G28940
EnsemblPlants:AT3G28940.1entrez:822530Gene3D:3.10.490.10GeneID:822530
GO:GO:0005886GO:GO:0009507Gramene:AT3G28940.1hmmpanther:PTHR31544
HOGENOM:HOG000236377InterPro:IPR009288InterPro:IPR013024KEGG:ath:AT3G28940
OMA:DMIEGSEPfam:PF06094PhylomeDB:Q9MBH2Proteomes:UP000006548
RefSeq:NP_566840.1SMR:Q9MBH2STRING:3702.AT3G28940.1SUPFAM:SSF110857
TAIR:AT3G28940UniGene:At.24324UniProt:Q9MBH2
Coordinates (TAIR10) chr3:-:10968324..10969311
Molecular Weight (calculated) 19465.90 Da
IEP (calculated) 4.71
GRAVY (calculated) -0.53
Length 169 amino acids
Sequence (TAIR10)
(BLAST)
001: MTSSDKSLSH DVFVYGSFQE PSVVNLILEC SPVMVPAQLH GYHVYRLKGR LHACISPSEN GLINGKILTG LTDSQLENLD MIEGSEYVRK TVEVVLTDTS
101: EKKQVETYVW ANKDDPNLYG EWDFEEWRRL HMDKFIEAST KFIEWKKNPD GRSREEFEKF VFDDPPTAA
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)