AT2G20950.1
Subcellular Consensus
(Prediction and Experimental) min: :max .
SUBAcon:nucleus 0.997 What is SUBAcon? |
|
||||||||||||||||||||||||||||
Experimental Localisations and PPI |
|
||||||||||||||||||||||||||||
SUBAcon links
AGI-AGI relationships |
|
||||||||||||||||||||||||||||
Description (TAIR10) | protein_coding : Arabidopsis phospholipase-like protein (PEARLI 4) family | ||||||||||||||||||||||||||||
Curator Summary (TAIR10) |
|||||||||||||||||||||||||||||
Computational Description (TAIR10) |
Arabidopsis phospholipase-like protein (PEARLI 4) family; CONTAINS InterPro DOMAIN/s: Phospholipase-like, arabidopsis (InterPro:IPR007942); BEST Arabidopsis thaliana protein match is: Arabidopsis phospholipase-like protein (PEARLI 4) family (TAIR:AT4G38550.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). | ||||||||||||||||||||||||||||
Protein Annotations |
|
||||||||||||||||||||||||||||
Coordinates (TAIR10) | chr2:+:9003295..9005354 | ||||||||||||||||||||||||||||
Molecular Weight (calculated) | 59573.20 Da | ||||||||||||||||||||||||||||
IEP (calculated) | 7.87 | ||||||||||||||||||||||||||||
GRAVY (calculated) | -1.06 | ||||||||||||||||||||||||||||
Length | 520 amino acids | ||||||||||||||||||||||||||||
Sequence (TAIR10) (BLAST) |
001: MDFFHSREKR HGKRAGLFGH KSASKSNPSS PPHLAEGRSQ PTTHFGMKRS ESEYAFPISD EQTTHWKPQQ QASERIPNSH QRPPVYRYST PERPREPDED 101: VTPRSNGSGS PFRSARTRTP DRRKRSSEIT KELYERMYEA DANVSPFHPF RSRSPAPYNT HERGRDYSRE RYEAEGNVTS RNRPSSPFHP SQSRSPPPHA 201: RTQRYNNGKD HFEGMYEADA DITPRNSPPM SPVHQHTSYS PPPPFYSSSD DEDDNNSTYL FPEIATGRRS RGVSGSSTPV HYKYQITSVE TYEQERQFEP 301: PELPDESQSF TMQEIARMRG LQSYGKEEIQ LAISETYVSV ANYKVRMSIA ATLEAIIDKH GDIAASSKLQ STSTRSFYLE SLAAAVMELK STALRDLTKT 401: RVAEIAAVVK DMDSVKIDVS WLKTAVTELA EAVEYYGKYD TAKIVREECD REMTAGKKEM EEMREELRRR EKETKECRER VTELAGRLGQ LEMKDVRVKK 501: NLELYESKVL KFDGHSVLVD |
||||||||||||||||||||||||||||
See Also |
|
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)