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AT2G20950.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
nucleus 0.997
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Arabidopsis phospholipase-like protein (PEARLI 4) family
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Arabidopsis phospholipase-like protein (PEARLI 4) family; CONTAINS InterPro DOMAIN/s: Phospholipase-like, arabidopsis (InterPro:IPR007942); BEST Arabidopsis thaliana protein match is: Arabidopsis phospholipase-like protein (PEARLI 4) family (TAIR:AT4G38550.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Protein Annotations
EMBL:BT008577EMBL:BT008662EMBL:CP002685EnsemblPlants:AT2G20950
EnsemblPlants:AT2G20950.1entrez:816629ExpressionAtlas:Q7X8U5GeneID:816629
GO:GO:0003682GO:GO:0007064GO:GO:0010468Gramene:AT2G20950.1
hmmpanther:PTHR21704hmmpanther:PTHR21704:SF19HOGENOM:HOG000131729InterPro:IPR007942
InterPro:IPR033031KEGG:ath:AT2G20950ncoils:CoilPANTHER:PTHR21704
Pfam:PF05278PhylomeDB:Q7X8U5Proteomes:UP000006548RefSeq:NP_850008.2
TAIR:AT2G20950UniGene:At.39631UniProt:Q7X8U5
Coordinates (TAIR10) chr2:+:9003295..9005354
Molecular Weight (calculated) 59573.20 Da
IEP (calculated) 7.87
GRAVY (calculated) -1.06
Length 520 amino acids
Sequence (TAIR10)
(BLAST)
001: MDFFHSREKR HGKRAGLFGH KSASKSNPSS PPHLAEGRSQ PTTHFGMKRS ESEYAFPISD EQTTHWKPQQ QASERIPNSH QRPPVYRYST PERPREPDED
101: VTPRSNGSGS PFRSARTRTP DRRKRSSEIT KELYERMYEA DANVSPFHPF RSRSPAPYNT HERGRDYSRE RYEAEGNVTS RNRPSSPFHP SQSRSPPPHA
201: RTQRYNNGKD HFEGMYEADA DITPRNSPPM SPVHQHTSYS PPPPFYSSSD DEDDNNSTYL FPEIATGRRS RGVSGSSTPV HYKYQITSVE TYEQERQFEP
301: PELPDESQSF TMQEIARMRG LQSYGKEEIQ LAISETYVSV ANYKVRMSIA ATLEAIIDKH GDIAASSKLQ STSTRSFYLE SLAAAVMELK STALRDLTKT
401: RVAEIAAVVK DMDSVKIDVS WLKTAVTELA EAVEYYGKYD TAKIVREECD REMTAGKKEM EEMREELRRR EKETKECRER VTELAGRLGQ LEMKDVRVKK
501: NLELYESKVL KFDGHSVLVD
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)