AT1G33600.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:extracellular 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Leucine-rich repeat (LRR) family protein | ||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Leucine-rich repeat (LRR) family protein; INVOLVED IN: signal transduction; LOCATED IN: cell wall, membrane, plant-type cell wall; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Leucine-rich repeat-containing N-terminal domain, type 2 (InterPro:IPR013210), Leucine-rich repeat (InterPro:IPR001611); BEST Arabidopsis thaliana protein match is: Leucine-rich repeat (LRR) family protein (TAIR:AT1G33590.1); Has 71591 Blast hits to 27926 proteins in 991 species: Archae - 22; Bacteria - 6296; Metazoa - 16731; Fungi - 641; Plants - 43101; Viruses - 4; Other Eukaryotes - 4796 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:+:12180776..12182212 | ||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 52473.90 Da | ||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 9.27 | ||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | 0.10 | ||||||||||||||||||||||||||||||||||||
| Length | 478 amino acids | ||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MNSCCFPLFI FAFVIFLRCL SPIEAATCHP DDEAGLLAFK SGITQDPTGI LSSWKKGTDC CSWKGVGCLT NRVTGLTING QSDVTGSFLS GTISPSLAKL 101: QHLVGIYFTN LRNITGSFPQ FLFQLPNVKQ VYFTNSRLSG PLPANIGALS ELGELSLDGN LFTGPIPSSI SNLTRLYLLN LGDNLLTGTI PLGLANLKIL 201: LSLNFGNNRL SETIPDIFKS MQKLQSLTLS RNKFSGNLPP SIASLKPILN YLDLSQNNLS GTIPTFLSNF KVLDSLDLSR NRFSGVVPKS LANMPKLFHL 301: NLSHNFLTGP LPAMKNVDGL ATLDLSYNQF HLKTIPKWVT SSPSMYSLKL VKCGINMSLD NWKPVRPNIY FYIDLSENEI SGSLTWFFNL AHNLYEFQAS 401: GNKLRFDMGK LNLSERLESL DLSRNLIFGK VPMTVAKLQK LNLSHNHLCG KLPVTKFPAS AFVGNDCLCG SPLSPCKI |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)