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AT5G40170.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
extracellular 0.997
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:22215637 (2012): plasma membrane
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : receptor like protein 54
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
receptor like protein 54 (RLP54); FUNCTIONS IN: kinase activity; INVOLVED IN: signal transduction, defense response; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Leucine-rich repeat, typical subtype (InterPro:IPR003591), Leucine-rich repeat (InterPro:IPR001611); BEST Arabidopsis thaliana protein match is: receptor like protein 27 (TAIR:AT2G33060.1); Has 95502 Blast hits to 27133 proteins in 1050 species: Archae - 52; Bacteria - 4975; Metazoa - 18576; Fungi - 1120; Plants - 63605; Viruses - 17; Other Eukaryotes - 7157 (source: NCBI BLink).
Protein Annotations
eggNOG:COG4886eggNOG:KOG0619EMBL:CP002688EnsemblPlants:AT5G40170
EnsemblPlants:AT5G40170.1entrez:834015Gene3D:3.80.10.10GeneID:834015
Gramene:AT5G40170.1hmmpanther:PTHR27004hmmpanther:PTHR27004:SF3InParanoid:F4KHA2
InterPro:IPR001611InterPro:IPR003591InterPro:IPR032675KEGG:ath:AT5G40170
OMA:SHRILEPPaxDb:F4KHA2Pfam:PF00560Pfam:PF13516
Pfam:PF13855Pfscan:PS51450PRIDE:F4KHA2PROSITE:PS51450
ProteinModelPortal:F4KHA2Proteomes:UP000006548RefSeq:NP_198833.1SMART:SM00369
SMR:F4KHA2STRING:3702.AT5G40170.1SUPFAM:SSF52058TAIR:AT5G40170
tair10-symbols:AtRLP54tair10-symbols:RLP54TMHMM:TMhelixUniGene:At.43845
UniProt:F4KHA2
Coordinates (TAIR10) chr5:-:16065179..16067557
Molecular Weight (calculated) 88802.40 Da
IEP (calculated) 7.36
GRAVY (calculated) -0.10
Length 792 amino acids
Sequence (TAIR10)
(BLAST)
001: MKSNLAVFFI TCFFCCVFVT SDSVYTLPFP FPRDQVEILL ELKNEFPSFN CDLTWKLDYF GRMDTRANIS SWTKDSDSFS GVSFDSETGV VKELSLGRQC
101: LTSLKANSSL FRFQHLRYLD LSENHFDSSP IPSGFGRLTY LESLDLSKNG FIGEVPSSIS NLSRLTNLDL SYNKLTGGIP NLHSLTLLEN IDLSYNKFSG
201: AIPSYLFTMP FLVSLNLRQN HLSDPLENIN YSATSKLLIL DMAYNLMSHR ILEPISKLAN LIQIDLSFQK TPYTFNFDFL LFKSLVRLDL SGNSVSVVGT
301: GSENLTHLDL SSCNITEFPM FIKDLQRLWW LDISNNRIKG KVPELLWTLP SMLHVNLSRN SFDSLEGTPK IILNSSISEL DLSSNAFKGS FPIIPPYVNI
401: MAASNNYFTG GIPLIFCKRY RLSLLDLSNN NFSGTIPRCL TNVSLGLEAL KLSNNSLTGR LPDIEDRLVL LDVGHNQISG KLPRSLVNCT TLKFLNVEGN
501: HINDTFPFWL KALTRLEIIV LRSNRFHGPI SSPEVSLSFT ALRIIDISRN SFNGSLPQNY FANWSAPLVN TPQGYRWPEY TGDEHSKYET PLWSYPSIHL
601: RIKGRSIELG KIPDTYTSID FSGNSFEGQI PESIGDLKSL IVLDLSNNSF TGRIPSSLAK LKQLESLDLS QNRISGNIPQ ELRELTFLGY VNMSHNRLTG
701: QIPQSTQVGG QPKSSFEGNI NLCGLPLQES CLRGNGVPST PHTQEQELPK QEHALNWKAA AIGYGPGVLF GLAIGQAFAR YKPVLFYKLF RL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)