AT1G78860.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:extracellular 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : D-mannose binding lectin protein with Apple-like carbohydrate-binding domain | ||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
curculin-like (mannose-binding) lectin family protein, low similarity to Ser/Thr protein kinase (Zea mays) GI:2598067; contains Pfam profile PF01453: Lectin (probable mannose binding) but not the protein kinase domain of the Z. mays protein | ||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
D-mannose binding lectin protein with Apple-like carbohydrate-binding domain; FUNCTIONS IN: sugar binding; LOCATED IN: cell wall, plant-type cell wall; EXPRESSED IN: stem; CONTAINS InterPro DOMAIN/s: Curculin-like (mannose-binding) lectin (InterPro:IPR001480), Apple-like (InterPro:IPR003609); BEST Arabidopsis thaliana protein match is: D-mannose binding lectin protein with Apple-like carbohydrate-binding domain (TAIR:AT1G78850.1); Has 2716 Blast hits to 2655 proteins in 114 species: Archae - 0; Bacteria - 54; Metazoa - 3; Fungi - 4; Plants - 2633; Viruses - 0; Other Eukaryotes - 22 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:-:29646168..29647499 | ||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 49196.90 Da | ||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.16 | ||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.30 | ||||||||||||||||||||||||||||||||||||
| Length | 443 amino acids | ||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MEFSTTLALF FTLSIFLVGA QAKVPVDDQF RVVNEGGYTD YSPIEYNPDV RGFVPFSDNF RLCFYNTTQN AYTLALRIGN RAQESTLRWV WEANRGSPVK 101: ENATLTFGED GNLVLAEADG RVVWQTNTAN KGVVGIKILE NGNMVIYDSN GKFVWQSFDS PTDTLLVGQS LKLNGQNKLV SRLSPSVNAN GPYSLVMEAK 201: KLVLYYTTNK TPKPIGYYEY EFFTKIAQLQ SMTFQAVEDA DTTWGLHMEG VDSGSQFNVS TFLSRPKHNA TLSFLRLESD GNIRVWSYST LATSTAWDVT 301: YTAFTNDNTD GNDECRIPEH CLGFGLCKKG QCNACPSDIG LLGWDETCKI PSLASCDPKT FHYFKIEGAD SFMTKYNGGS TTTESACGDK CTRDCKCLGF 401: FYNRKSSRCW LGYELKTLTK TGDTSLVAYV KAPNASKKSA LAI |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)