AT2G35880.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:cytosol 0.797 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : TPX2 (targeting protein for Xklp2) protein family | ||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
TPX2 (targeting protein for Xklp2) protein family; FUNCTIONS IN: molecular_function unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Xklp2 targeting protein (InterPro:IPR009675); BEST Arabidopsis thaliana protein match is: TPX2 (targeting protein for Xklp2) protein family (TAIR:AT4G32330.3); Has 16554 Blast hits to 10282 proteins in 807 species: Archae - 18; Bacteria - 1410; Metazoa - 6904; Fungi - 1967; Plants - 895; Viruses - 63; Other Eukaryotes - 5297 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr2:-:15063204..15065259 | ||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 46699.00 Da | ||||||||||||||||||||||||||||||||
| IEP (calculated) | 10.46 | ||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -1.04 | ||||||||||||||||||||||||||||||||
| Length | 432 amino acids | ||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MASEDLNIVA ESKKGEENVI VDNSKDMNRP ENLDLSTEKT DTANENGPKD EASKLVKEAD LPESGTSVKS KTAKDNKPVK RKSGTFSRSP RFMSQSSSFP 101: TKGAYTDITR KSIDATTSKT SLKPVVAGGS KPKATPSSSS GVSAKRTSLV SAPLKKQTMP VKTISKDAAS GPTSKLGDEG SKSIKEETAG KDVEEAGSTT 201: AVVADKVSNP LKAEMASKDD EDTRSTTTST STPRGRRSSV GSASGFSFRL EERAEKRKEF YMKLEEKIHA KEVEKTNLQA KSKESQEEEI KRLRKSLTFK 301: AGPMPSFYKE PPPKVELKKI PTTRPKSPKL GRRKSSSDAT GGEAAPRVTK PKDSSSSTVK KPITKSQPKL ETQEKSVKAK EKKKKVKKEE AEKRGEEEKA 401: TAVAAKPEEQ KPNSNNIQVK AEIMASEVVV GG |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)