suba logo
AT1G30690.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

.
SUBAcon:
plasma membrane 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Sec14p-like phosphatidylinositol transfer family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Sec14p-like phosphatidylinositol transfer family protein; FUNCTIONS IN: transporter activity; INVOLVED IN: transport; LOCATED IN: cytosol, nucleus, plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Cellular retinaldehyde-binding/triple function, C-terminal (InterPro:IPR001251), Cellular retinaldehyde-binding/triple function, N-terminal (InterPro:IPR008273), GOLD (InterPro:IPR009038), Cellular retinaldehyde binding/alpha-tocopherol transport (InterPro:IPR001071), Phosphatidylinositol transfer protein-like, N-terminal (InterPro:IPR011074); BEST Arabidopsis thaliana protein match is: SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein (TAIR:AT4G09160.1); Has 58641 Blast hits to 33210 proteins in 2176 species: Archae - 407; Bacteria - 9659; Metazoa - 18729; Fungi - 5495; Plants - 3007; Viruses - 390; Other Eukaryotes - 20954 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410XRSQeggNOG:KOG1471EMBL:AK317487EnsemblPlants:AT1G30690
EnsemblPlants:AT1G30690.1EnsemblPlants:AT1G30690.2entrez:839949ExpressionAtlas:B9DHD5
Gene3D:3.40.525.10GeneID:839949GO:GO:0005215GO:GO:0005622
GO:GO:0016021Gramene:AT1G30690.1Gramene:AT1G30690.2hmmpanther:PTHR23324
hmmpanther:PTHR23324:SF85InterPro:IPR001071InterPro:IPR001251InterPro:IPR009038
InterPro:IPR011074iPTMnet:B9DHD5KEGG:ath:AT1G30690ncoils:Coil
OMA:RYRTKTEPaxDb:B9DHD5Pfam:PF00650Pfam:PF03765
Pfam:Q94C59Pfscan:PS50191Pfscan:PS50866PhylomeDB:B9DHD5
PRIDE:B9DHD5PRINTS:PR00180PROSITE:PS50191PROSITE:PS50866
ProteinModelPortal:B9DHD5RefSeq:NP_001031119.1RefSeq:NP_564360.1SMART:SM00516
SMART:SM01100SMR:B9DHD5STRING:3702.AT1G30690.1SUPFAM:SSF46938
SUPFAM:SSF52087TAIR:AT1G30690UniGene:At.17077UniProt:B9DHD5
UniProt:Q94C59
Coordinates (TAIR10) chr1:+:10888284..10890085
Molecular Weight (calculated) 61192.50 Da
IEP (calculated) 4.59
GRAVY (calculated) -0.59
Length 540 amino acids
Sequence (TAIR10)
(BLAST)
001: MTAEVKVEEK QVESEVVIAP AVVPEETTVK AVVEETKVEE DESKPEGVEK SASFKEESDF FADLKESEKK ALSDLKSKLE EAIVDNTLLK TKKKESSPMK
101: EKKEEVVKPE AEVEKKKEEA AEEKVEEEKK SEAVVTEEAP KAETVEAVVT EEIIPKEEVT TVVEKVEEET KEEEKKTEDV VTEEVKAETI EVEDEDESVD
201: KDIELWGVPL LPSKGAESTD VILLKFLRAR DFKVNEAFEM LKKTLKWRKQ NKIDSILGEE FGEDLATAAY MNGVDRESHP VCYNVHSEEL YQTIGSEKNR
301: EKFLRWRFQL MEKGIQKLNL KPGGVTSLLQ IHDLKNAPGV SRTEIWVGIK KVIETLQDNY PEFVSRNIFI NVPFWFYAMR AVLSPFLTQR TKSKFVVARP
401: AKVRETLLKY IPADELPVQY GGFKTVDDTE FSNETVSEVV VKPGSSETIE IPAPETEGTL VWDIAVLGWE VNYKEEFVPT EEGAYTVIVQ KVKKMGANEG
501: PIRNSFKNSQ AGKIVLTVDN VSGKKKKVLY RYRTKTESSS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)