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AT5G38880.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
unknown protein; Has 474 Blast hits to 433 proteins in 138 species: Archae - 6; Bacteria - 80; Metazoa - 195; Fungi - 44; Plants - 59; Viruses - 0; Other Eukaryotes - 90 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IJ7HeggNOG:ENOG410XRWJEMBL:AB009048EMBL:AK220756
EMBL:AK227777EMBL:BT009661EMBL:CP002688EnsemblPlants:AT5G38880
EnsemblPlants:AT5G38880.1entrez:833879GeneID:833879Genevisible:Q9FMB4
GO:GO:0005876GO:GO:0007067GO:GO:0009524GO:GO:0051011
GO:GO:0051225GO:GO:0051301GO:GO:0070652Gramene:AT5G38880.1
hmmpanther:PTHR34968HOGENOM:HOG000029704InterPro:IPR029131iPTMnet:Q9FMB4
KEGG:ath:AT5G38880ncoils:CoilOMA:TIDMAGSPaxDb:Q9FMB4
Pfam:PF14817PhylomeDB:Q9FMB4PRIDE:Q570F2ProteinModelPortal:Q9FMB4
Proteomes:UP000006548RefSeq:NP_198704.2STRING:3702.AT5G38880.1TAIR:AT5G38880
UniGene:At.27601UniProt:Q9FMB4
Coordinates (TAIR10) chr5:-:15563621..15568804
Molecular Weight (calculated) 89186.00 Da
IEP (calculated) 6.31
GRAVY (calculated) -0.53
Length 796 amino acids
Sequence (TAIR10)
(BLAST)
001: MQSLSSSAPT PEAILEWLQK EMGYRQLGPY NGSSKSHVPS IDAIRKICRG NMIPIWNFLI NRVKSEKTVE RIRRNITVHG GSSNASIGSS VNPGKEESKS
101: KGRRKDKTVT GESSSYAEDR EAALQERELA AKEVERLRNI VRRQRKDLKA RMLEVSREEA ERKRMLDERA NYRHKQALLE AYDQQCDEAT RIFAEYHKRL
201: QVYVNQANDA QRSVNSSNEV LSSLSANSER EAVYSTVKGT KSADDVILME TTRERNIRIV CDLLASRMIE RIRNSFPAYE GNGICSLPEL ETAKLGFEYD
301: GEITDEMKTV IVNSLRGPPL LLQAIAAYTL RIKTLISREM EKIDVRADAE MLRYKFENNR VTDNSSSDVS SPLSYQFNGN GKIGTDTHFQ GSNNQLLERQ
401: KAHVQQFLAT EDALNKAAEA RDLCHKFINR LHGSADTATH SFVGGTTQSG SNLRQFELDV WGKEREAAGL RASLNTLLSE IQRLNKLCAE RKEAEDSLKK
501: KWKKIEEFDA RRSELETIYT TLLKANMDAV AFWNQQPLAA REYASATVIP ASEVVVDISN SAKDFIEKEV SAFFQSPDNS LYMLPATPQG LLESMGANGS
601: TGPEAVAYAE KNAALLTARA GARDPSAIPS ICRISAALQY PAGLEGSDAS LASVLESLEF CLRVRGSEAC VLEDLAKAID LVHIRQDLVE SGHSLLDHAF
701: RAQQKYERTT NYCLDLASEQ ENTISDQWLP ELRTAVQNAQ ASSEHCKYVR GLLDEWWEQP ASTVVDWVTV DGQSVAAWQN HVKQLLAFYD KESLRT
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)