AT5G38880.1
Subcellular Consensus
(Prediction and Experimental) min: :max .
SUBAcon:nucleus 1.000 What is SUBAcon? |
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Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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Description (TAIR10) | protein_coding : | ||||||||||||||||||||||||||||||||||||||||
Curator Summary (TAIR10) |
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Computational Description (TAIR10) |
unknown protein; Has 474 Blast hits to 433 proteins in 138 species: Archae - 6; Bacteria - 80; Metazoa - 195; Fungi - 44; Plants - 59; Viruses - 0; Other Eukaryotes - 90 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||
Protein Annotations |
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Coordinates (TAIR10) | chr5:-:15563621..15568804 | ||||||||||||||||||||||||||||||||||||||||
Molecular Weight (calculated) | 89186.00 Da | ||||||||||||||||||||||||||||||||||||||||
IEP (calculated) | 6.31 | ||||||||||||||||||||||||||||||||||||||||
GRAVY (calculated) | -0.53 | ||||||||||||||||||||||||||||||||||||||||
Length | 796 amino acids | ||||||||||||||||||||||||||||||||||||||||
Sequence (TAIR10) (BLAST) |
001: MQSLSSSAPT PEAILEWLQK EMGYRQLGPY NGSSKSHVPS IDAIRKICRG NMIPIWNFLI NRVKSEKTVE RIRRNITVHG GSSNASIGSS VNPGKEESKS 101: KGRRKDKTVT GESSSYAEDR EAALQERELA AKEVERLRNI VRRQRKDLKA RMLEVSREEA ERKRMLDERA NYRHKQALLE AYDQQCDEAT RIFAEYHKRL 201: QVYVNQANDA QRSVNSSNEV LSSLSANSER EAVYSTVKGT KSADDVILME TTRERNIRIV CDLLASRMIE RIRNSFPAYE GNGICSLPEL ETAKLGFEYD 301: GEITDEMKTV IVNSLRGPPL LLQAIAAYTL RIKTLISREM EKIDVRADAE MLRYKFENNR VTDNSSSDVS SPLSYQFNGN GKIGTDTHFQ GSNNQLLERQ 401: KAHVQQFLAT EDALNKAAEA RDLCHKFINR LHGSADTATH SFVGGTTQSG SNLRQFELDV WGKEREAAGL RASLNTLLSE IQRLNKLCAE RKEAEDSLKK 501: KWKKIEEFDA RRSELETIYT TLLKANMDAV AFWNQQPLAA REYASATVIP ASEVVVDISN SAKDFIEKEV SAFFQSPDNS LYMLPATPQG LLESMGANGS 601: TGPEAVAYAE KNAALLTARA GARDPSAIPS ICRISAALQY PAGLEGSDAS LASVLESLEF CLRVRGSEAC VLEDLAKAID LVHIRQDLVE SGHSLLDHAF 701: RAQQKYERTT NYCLDLASEQ ENTISDQWLP ELRTAVQNAQ ASSEHCKYVR GLLDEWWEQP ASTVVDWVTV DGQSVAAWQN HVKQLLAFYD KESLRT |
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See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)