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AT5G39730.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
cytosol 1.000
ASURE: cytosol
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31186290 (2019): cytosol None
  • PMID:30783145 (2019): extracellular region plant-type cell wall
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:26572690 (2016): extracellular region plant-type cell wall
  • PMID:23673981 (2013): plastid plastid stroma plastoglobules
  • PMID:21166475 (2011): cytosol
  • PMID:17644812 (2007): plasma membrane
  • PMID:15060130 (2004): plasma membrane
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : AIG2-like (avirulence induced gene) family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
AIG2-like (avirulence induced gene) family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to salt stress; LOCATED IN: plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: AIG2-like (InterPro:IPR009288); BEST Arabidopsis thaliana protein match is: avirulence induced gene 2 like protein (TAIR:AT5G39720.1); Has 284 Blast hits to 284 proteins in 86 species: Archae - 10; Bacteria - 64; Metazoa - 0; Fungi - 51; Plants - 104; Viruses - 0; Other Eukaryotes - 55 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410J20XeggNOG:ENOG410XV5JEMBL:AB016876EMBL:AY035142
EMBL:AY059076EMBL:AY081320EMBL:AY114688EMBL:CP002688
EnsemblPlants:AT5G39730EnsemblPlants:AT5G39730.1entrez:833969Gene3D:3.10.490.10
GeneID:833969GO:GO:0005829GO:GO:0005886GO:GO:0009651
Gramene:AT5G39730.1hmmpanther:PTHR31544HOGENOM:HOG000236377IntAct:Q9FIX1
InterPro:IPR009288InterPro:IPR013024KEGG:ath:AT5G39730OMA:GKGRDDF
Pfam:PF06094PhylomeDB:Q9FIX1Proteomes:UP000006548RefSeq:NP_198789.1
SMR:Q9FIX1STRING:3702.AT5G39730.1SUPFAM:SSF110857TAIR:AT5G39730
UniGene:At.9359UniProt:Q9FIX1
Coordinates (TAIR10) chr5:+:15901740..15902624
Molecular Weight (calculated) 20018.60 Da
IEP (calculated) 4.75
GRAVY (calculated) -0.70
Length 172 amino acids
Sequence (TAIR10)
(BLAST)
001: MSSSDSPQLH NIFVYGSFQE PDIIHVMLNR IPEIVSATLP GFKRFRLKGR LYPCIIPSEN GEVHGKVLMG LTNDELENVD WVEGNEYERV FVEVVRKDNS
101: EKMRVETYPW INKNDPDIGG EWDFEEWKRL HMKTFIEAFT EIMERKRNPQ GKGRDDFSNV LKEEDPANAP SS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)