AT5G42890.1
Subcellular Consensus
(Prediction and Experimental) min: :max .
SUBAcon:peroxisome 1.000 What is SUBAcon? |
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Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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Description (TAIR10) | protein_coding : sterol carrier protein 2 | ||||||||||||||||||||||||||||||||||||||||
Curator Summary (TAIR10) |
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Computational Description (TAIR10) |
sterol carrier protein 2 (SCP2); FUNCTIONS IN: oxidoreductase activity, sterol binding; INVOLVED IN: glyoxylate metabolic process, intracellular lipid transport, fatty acid beta-oxidation, seed germination; LOCATED IN: peroxisome; EXPRESSED IN: 32 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: SCP2 sterol-binding domain (InterPro:IPR003033), Short-chain dehydrogenase/reductase SDR (InterPro:IPR002198); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||
Protein Annotations |
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Coordinates (TAIR10) | chr5:-:17194458..17195910 | ||||||||||||||||||||||||||||||||||||||||
Molecular Weight (calculated) | 13568.60 Da | ||||||||||||||||||||||||||||||||||||||||
IEP (calculated) | 9.86 | ||||||||||||||||||||||||||||||||||||||||
GRAVY (calculated) | -0.34 | ||||||||||||||||||||||||||||||||||||||||
Length | 123 amino acids | ||||||||||||||||||||||||||||||||||||||||
Sequence (TAIR10) (BLAST) |
001: MANTQLKSDA IMDMMKEHLS TDAGKEVTEK IGLVYQINIA PKKLGFEEVT YIVDLKKGEV TKGKYEGGKV DATFSFKDDD FVKVATGKMN PQMAFIRGAM 101: KIKGSLSAAQ KFTPDIFPKP SKL |
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See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)