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AT5G42890.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
peroxisome 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : sterol carrier protein 2
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
sterol carrier protein 2 (SCP2); FUNCTIONS IN: oxidoreductase activity, sterol binding; INVOLVED IN: glyoxylate metabolic process, intracellular lipid transport, fatty acid beta-oxidation, seed germination; LOCATED IN: peroxisome; EXPRESSED IN: 32 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: SCP2 sterol-binding domain (InterPro:IPR003033), Short-chain dehydrogenase/reductase SDR (InterPro:IPR002198); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG4111SAEeggNOG:KOG4170EMBL:AB008264EMBL:AY050909
EMBL:AY087906EMBL:AY117215EMBL:CP002688EnsemblPlants:AT5G42890
EnsemblPlants:AT5G42890.1entrez:834300Gene3D:3.30.1050.10GeneID:834300
GO:GO:0005777GO:GO:0006635GO:GO:0009735GO:GO:0009845
GO:GO:0032365GO:GO:0046487Gramene:AT5G42890.1hmmpanther:PTHR10094
hmmpanther:PTHR10094:SF17HOGENOM:HOG000141680InterPro:IPR003033KEGG:ath:AT5G42890
OMA:FPKPSKMPfam:PF02036PhylomeDB:Q9FMN0ProMEX:Q9FMN0
Proteomes:UP000006548RefSeq:NP_199103.1SMR:Q9FMN0STRING:3702.AT5G42890.1
SUPFAM:SSF55718TAIR:AT5G42890tair10-symbols:ATSCP2tair10-symbols:SCP2
UniGene:At.6521UniProt:Q9FMN0
Coordinates (TAIR10) chr5:-:17194458..17195910
Molecular Weight (calculated) 13568.60 Da
IEP (calculated) 9.86
GRAVY (calculated) -0.34
Length 123 amino acids
Sequence (TAIR10)
(BLAST)
001: MANTQLKSDA IMDMMKEHLS TDAGKEVTEK IGLVYQINIA PKKLGFEEVT YIVDLKKGEV TKGKYEGGKV DATFSFKDDD FVKVATGKMN PQMAFIRGAM
101: KIKGSLSAAQ KFTPDIFPKP SKL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)