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AT1G61600.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
cytosol 0.999
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:24134884 (2013): cytoskeleton microtubules
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Protein of unknown function (DUF1262)
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Protein of unknown function (DUF1262); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: membrane; EXPRESSED IN: leaf; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1262 (InterPro:IPR010683); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF1262) (TAIR:AT1G13540.1); Has 103 Blast hits to 96 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 103; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IVF8eggNOG:ENOG4111AZIEMBL:AC005850EMBL:CP002684
EnsemblPlants:AT1G61600EnsemblPlants:AT1G61600.1entrez:842456GeneID:842456
GO:GO:0016020Gramene:AT1G61600.1hmmpanther:PTHR31050hmmpanther:PTHR31050:SF0
HOGENOM:HOG000242798InterPro:IPR010683KEGG:ath:AT1G61600ncoils:Coil
OMA:GWELRTSPfam:PF06880PhylomeDB:Q9SY90PIR:D96641
Proteomes:UP000006548RefSeq:NP_176354.1TAIR:AT1G61600UniGene:At.36410
UniProt:Q9SY90
Coordinates (TAIR10) chr1:+:22729816..22731182
Molecular Weight (calculated) 48775.50 Da
IEP (calculated) 9.84
GRAVY (calculated) -0.68
Length 421 amino acids
Sequence (TAIR10)
(BLAST)
001: MYVTRTLSQF RKYQKTLSEE SPEGPFSGVL VITDEEAETE DTFCFGMCTR TKIEKLPLPQ DKILSVVHLD SSGNRETSVK KVLFIPALDQ PLSSNRYYVV
101: HARGRHKGKV SVCSREIEKG VCCFPDILHD KKPKPLDPRN IYQTVKINRH HDRTFYAKSV APDGTPPTFL KKKGWELRTS RSLHPRRPRE ALGLDEELRA
201: RLPAFGFPVS TIRSGSVIVG EWYCPFMFVK ENCSVSQQMR KSMFYRITLS QYWERIYHCG NNDLDENNDE NEEEVVRVEA NVVREANYVK GMEAVKGEKE
301: GHGGFYWYRQ VQGPRGPGER RRKTGLRSPV GLSFVVVERM RRVMEEGGWV GGGRKVVRVE RDEPIRVCRR DGRNMNGNND RNWRRFGCYV LVESFGLRRA
401: DGVLLVKCVF RHTNRLRCNW E
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)