AT3G45400.1
|
Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:endoplasmic reticulum 0.944 What is SUBAcon? |
|
||||||||||||||||||||||||||||||||
| Experimental Localisations and PPI |
|
||||||||||||||||||||||||||||||||
|
SUBAcon links
AGI-AGI relationships |
|
||||||||||||||||||||||||||||||||
| Description (TAIR10) | protein_coding : exostosin family protein | ||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
|||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
exostosin family protein; FUNCTIONS IN: catalytic activity; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system, membrane; CONTAINS InterPro DOMAIN/s: Exostosin-like (InterPro:IPR004263); BEST Arabidopsis thaliana protein match is: Exostosin family protein (TAIR:AT3G03650.1); Has 1358 Blast hits to 1353 proteins in 108 species: Archae - 0; Bacteria - 4; Metazoa - 218; Fungi - 4; Plants - 1054; Viruses - 0; Other Eukaryotes - 78 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||
| Protein Annotations |
|
||||||||||||||||||||||||||||||||
| Coordinates (TAIR10) | chr3:+:16651963..16653479 | ||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 54450.00 Da | ||||||||||||||||||||||||||||||||
| IEP (calculated) | 9.20 | ||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.31 | ||||||||||||||||||||||||||||||||
| Length | 475 amino acids | ||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MAMVEKNSSA IGYVARNLLL SLFVVTTILF ALSCYFVLRS TAHNRFLSST FPSKSFVDVR PEKANCRCVK DEKSSVIAGP LKVYMYNMDP EFHFGLLDWK 101: KKEGSDSSVW PDIQKYIPPY PGGLNLQHSI EYWLTLDLLA SEYENAPRSV AAKRVYNSSE ADVIFVPFFS SLSYNRFSKV NPHQKTSRNK DLQGKLVTFL 201: TAQEEWKRSG GRDHVVLAHH PNSMLDARNK LFPAMFILSD FGRYPPTVAN VEKDVIAPYK HVIKAYENDT SGFDSRPILL YFQGAIYRKD GGFVRQELFY 301: LLQDEKDVHF SFGSVRNGGI NKASQGMHNS KFCLNIAGDT PSSNRLFDAI ASHCVPVIIS DDIELPFEDV IDYSEFSVFV RTSDALKENF LVNLIRGITK 401: EEWTRMWNRL KEVEKYYEFH FPSKVDDAVQ MIWQAIARKV PGVKMRIHKS RRYSGSVSET GKESRWSSLI PRSFW |
||||||||||||||||||||||||||||||||
| See Also |
|
||||||||||||||||||||||||||||||||
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)