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AT5G35670.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : IQ-domain 33
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
IQ-domain 33 (iqd33); CONTAINS InterPro DOMAIN/s: IQ calmodulin-binding region (InterPro:IPR000048); BEST Arabidopsis thaliana protein match is: IQ-domain 3 (TAIR:AT3G52290.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IX09eggNOG:ENOG410YHE5EMBL:AK175704EMBL:AY088904
EMBL:CP002688EnsemblPlants:AT5G35670EnsemblPlants:AT5G35670.1entrez:833540
GeneID:833540Gramene:AT5G35670.1hmmpanther:PTHR32295hmmpanther:PTHR32295:SF15
HOGENOM:HOG000241953InterPro:IPR000048KEGG:ath:AT5G35670ncoils:Coil
OMA:CASNDLPPfam:PF00612Pfscan:PS50096PhylomeDB:Q8L8M9
PROSITE:PS50096Proteomes:UP000006548RefSeq:NP_568529.1STRING:3702.AT5G35670.1
TAIR:AT5G35670tair10-symbols:iqd33UniGene:At.64768UniGene:At.7493
UniProt:Q8L8M9
Coordinates (TAIR10) chr5:+:13856170..13857910
Molecular Weight (calculated) 49546.60 Da
IEP (calculated) 8.56
GRAVY (calculated) -0.86
Length 442 amino acids
Sequence (TAIR10)
(BLAST)
001: MGVTGGLVRS IFFRNKSFGA HDYNNGRGNL GEKKRWSSVR SYLCGDEFNS VRAVNDSESI KDSEALLTMS QQLSSEFGMP FGSVIAIEDS ASVRHLEDED
101: SGSVKSSEAT VTQPLLEEKS KGLDCYLKEE DVEDNQSEAT ETHIPKKHQT TPISKLFLEE DAAVIIQSAF RSYLAIRRSK EEEETFAKEE SFSGEESQDN
201: ASMGTSLEAQ TGNSVKAPFF RRKRVSANRR TLQKNNTQVL RIKEDWDDST VSSTISKSRI QSRVEAMTKR ERALAYAFSQ QLRICSKKKQ IDRSSEDDSN
301: IGWSWLERWM ATRVPDSIPI EPRTDVATKN QSLIRKNRAF GTAGELESCA SNDLPLHFES ISETQGDATT VLQTEKSSFK PSISKRKSVP SYKSQRKHHK
401: LQATKSDLQQ QTKKAKKAKT TPTSCKTGNE CEETSHKLNS ST
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)