AT1G56210.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Heavy metal transport/detoxification superfamily protein | ||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Heavy metal transport/detoxification superfamily protein ; FUNCTIONS IN: metal ion binding; INVOLVED IN: metal ion transport; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Heavy metal transport/detoxification protein (InterPro:IPR006121); BEST Arabidopsis thaliana protein match is: Heavy metal transport/detoxification superfamily protein (TAIR:AT5G27690.1); Has 4344 Blast hits to 3634 proteins in 371 species: Archae - 2; Bacteria - 270; Metazoa - 1178; Fungi - 515; Plants - 1643; Viruses - 22; Other Eukaryotes - 714 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:+:21035715..21037019 | ||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 39807.80 Da | ||||||||||||||||||||||||||||||||
| IEP (calculated) | 7.78 | ||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -1.05 | ||||||||||||||||||||||||||||||||
| Length | 364 amino acids | ||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MATDEMKSET KKTEHKQKQS TQIKQDLPPP TIPPLPLPYK SCTLKVSIHC EGCKRKVKKI LTSIEGVFKV DIDVKQHKVT VIGIISPEIL LKKLNKAGKN 101: AEQLPEIPDP VDNKPKPVDP KEKNKKKKKE EKVQITNEAT SSGIDNPEKP GSGECDKPES EKPVDEKCLS GDGGETSGPV KEEKKDVLKE KDSGKEESPS 201: PPADSSAPAA EKKAEDTGGA VPDNGKVGKK KKKKGQSLAT TNNPTDGPAR TQSLPPPTAT DYDRPINQIN DHHITTTNNP PRHDLYPYPA QGYYAPQVMY 301: GVSYNVAQPP VSVDAASYYT PPPPYSYAYM HNGYQPSDQN PCQPRPSDSF ELFSDENPNG CAIM |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)