AT1G74070.1
Subcellular Consensus
(Prediction and Experimental) min: :max .
SUBAcon:plastid 1.000 What is SUBAcon? |
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Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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Description (TAIR10) | protein_coding : Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein | ||||||||||||||||||||||||||||||||||||||||||||||||||||
Curator Summary (TAIR10) |
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Computational Description (TAIR10) |
Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein; FUNCTIONS IN: peptidyl-prolyl cis-trans isomerase activity; INVOLVED IN: protein folding; LOCATED IN: chloroplast thylakoid lumen, chloroplast; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cyclophilin-like (InterPro:IPR015891), Peptidyl-prolyl cis-trans isomerase, cyclophilin-type (InterPro:IPR002130); BEST Arabidopsis thaliana protein match is: cyclophilin 20-2 (TAIR:AT5G13120.1); Has 3262 Blast hits to 3261 proteins in 458 species: Archae - 0; Bacteria - 134; Metazoa - 1442; Fungi - 557; Plants - 702; Viruses - 0; Other Eukaryotes - 427 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||||||
Protein Annotations |
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Coordinates (TAIR10) | chr1:-:27851749..27852861 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
Molecular Weight (calculated) | 34376.70 Da | ||||||||||||||||||||||||||||||||||||||||||||||||||||
IEP (calculated) | 10.04 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
GRAVY (calculated) | -0.21 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
Length | 317 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sequence (TAIR10) (BLAST) |
001: MMQPNAKLLS PSAKFLPSPI EPPQHNRRTT VGAPPSLERN CKLSRRNLSK SSLLLLLTTQ TTLTPLLDFS KAQADTIANP NLTNCENRIP TKKAFIDVSI 101: DGEPIGRIII GLYGDDVPAG TARFSSIVSG KAGITYRRKD FVKIMPGYVQ HGGIRSYGVD AERATAAVGS LQNLIEEWER GKRGEICNVN KAGSVGIVVR 201: DPSKPPPKTK LVARNGKLVV EEEVIAVGPN GTEFVITAVD SPELEDSVLV IGKVLEGMGV VEKMREVKTV RDNTSSPYFR VAKVIGDKRA VVAERGFNRP 301: YSKVVVTNCG LIESQTL |
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See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)