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AT1G54830.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : nuclear factor Y, subunit C3
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
nuclear factor Y, subunit C3 (NF-YC3); FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus, intracellular; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Transcription factor CBF/NF-Y/archaeal histone (InterPro:IPR003958), Histone-fold (InterPro:IPR009072); BEST Arabidopsis thaliana protein match is: nuclear factor Y, subunit C9 (TAIR:AT1G08970.2); Has 1367 Blast hits to 1367 proteins in 230 species: Archae - 0; Bacteria - 0; Metazoa - 451; Fungi - 368; Plants - 431; Viruses - 0; Other Eukaryotes - 117 (source: NCBI BLink).
Protein Annotations
BioGrid:27147eggNOG:COG5208eggNOG:KOG1657EMBL:AC005388
EMBL:AC069144EMBL:AY062775EMBL:AY081654EMBL:AY087517
EMBL:CP002684EnsemblPlants:AT1G54830EnsemblPlants:AT1G54830.1EnsemblPlants:AT1G54830.2
EnsemblPlants:AT1G54830.3entrez:841922Gene3D:1.10.20.10GeneID:841922
Genevisible:Q9ZVL3GO:GO:0003677GO:GO:0003700GO:GO:0005634
GO:GO:0006351Gramene:AT1G54830.1Gramene:AT1G54830.2Gramene:AT1G54830.3
hmmpanther:PTHR10252hmmpanther:PTHR10252:SF48HOGENOM:HOG000200436InParanoid:Q9ZVL3
IntAct:Q9ZVL3InterPro:IPR003958InterPro:IPR009072KEGG:ath:AT1G54830
OMA:PAYHQIHPaxDb:Q9ZVL3Pfam:PF00808Pfam:Q9ZVL3
PhylomeDB:Q9ZVL3PRO:PR:Q9ZVL3ProteinModelPortal:Q9ZVL3Proteomes:UP000006548
Reactome:R-ATH-2426168RefSeq:NP_175880.1RefSeq:NP_849808.1RefSeq:NP_974030.1
SMR:Q9ZVL3STRING:3702.AT1G54830.1SUPFAM:SSF47113TAIR:AT1G54830
tair10-symbols:NF-YC3UniGene:At.10845UniGene:At.28997UniGene:At.48309
UniProt:Q9ZVL3
Coordinates (TAIR10) chr1:+:20451672..20452325
Molecular Weight (calculated) 24313.60 Da
IEP (calculated) 4.75
GRAVY (calculated) -0.71
Length 217 amino acids
Sequence (TAIR10)
(BLAST)
001: MDQQGQSSAM NYGSNPYQTN AMTTTPTGSD HPAYHQIHQQ QQQQLTQQLQ SFWETQFKEI EKTTDFKNHS LPLARIKKIM KADEDVRMIS AEAPVVFARA
101: CEMFILELTL RSWNHTEENK RRTLQKNDIA AAVTRTDIFD FLVDIVPRED LRDEVLGGVG AEAATAAGYP YGYLPPGTAP IGNPGMVMGN PGAYPPNPYM
201: GQPMWQQPGP EQQDPDN
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)