suba logo
AT3G12480.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

.
SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : nuclear factor Y, subunit C11
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
nuclear factor Y, subunit C11 (NF-YC11); FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus, intracellular; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Transcription factor CBF/NF-Y/archaeal histone (InterPro:IPR003958), Histone-fold (InterPro:IPR009072); BEST Arabidopsis thaliana protein match is: Histone superfamily protein (TAIR:AT5G19490.1); Has 1099 Blast hits to 1099 proteins in 222 species: Archae - 0; Bacteria - 6; Metazoa - 308; Fungi - 314; Plants - 371; Viruses - 0; Other Eukaryotes - 100 (source: NCBI BLink).
Protein Annotations
eggNOG:COG5247eggNOG:KOG1659EMBL:AF462841EMBL:AP002047
EMBL:AY143847EMBL:CP002686EnsemblPlants:AT3G12480EnsemblPlants:AT3G12480.1
entrez:820427Gene3D:1.10.20.10GeneID:820427GO:GO:0003700
GO:GO:0005634GO:GO:0005829GO:GO:0006355Gramene:AT3G12480.1
hmmpanther:PTHR10252hmmpanther:PTHR10252:SF40IntAct:Q9LHG0InterPro:IPR003958
InterPro:IPR009072KEGG:ath:AT3G12480OMA:GQGHGDVPfam:PF00808
PhylomeDB:Q9LHG0PRO:PR:Q9LHG0Proteomes:UP000006548RefSeq:NP_187854.2
SMR:Q9LHG0STRING:3702.AT3G12480.1SUPFAM:SSF47113TAIR:AT3G12480
tair10-symbols:NF-YC11UniGene:At.16910UniGene:At.48650UniProt:Q9LHG0
Coordinates (TAIR10) chr3:+:3958065..3960278
Molecular Weight (calculated) 32293.40 Da
IEP (calculated) 4.86
GRAVY (calculated) -0.95
Length 293 amino acids
Sequence (TAIR10)
(BLAST)
001: MRKKLDTRFP AARIKKIMQA DEDVGKIALA VPVLVSKSLE LFLQDLCDRT YEITLERGAK TVSSLHLKHC VERYNVFDFL REVVSKVPDY GHSQGQGHGD
101: VTMDDRSISK RRKPISDEVN DSDEEYKKSK TQEIGSAKTS GRGGRGRGRG RGRGGRAAKA AEREGLNREM EVEAANSGQP PPEDNVKMHA SESSPQEDEK
201: KGIDGTAASN EDTKQHLQSP KEGIDFDLNA ESLDLNETKL APATGTTTTT TAATDSEEYS GWPMMDISKM DPAQLASLGK RIDEDEEDYD EEG
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)