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AT1G16210.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:30783145 (2019): extracellular region plant-type cell wall
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:26572690 (2016): extracellular region plant-type cell wall
  • PMID:24134884 (2013): cytoskeleton microtubules
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1014 (InterPro:IPR010422); Has 16107 Blast hits to 8386 proteins in 1107 species: Archae - 26; Bacteria - 3370; Metazoa - 4013; Fungi - 1516; Plants - 526; Viruses - 120; Other Eukaryotes - 6536 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410ZIM9eggNOG:KOG3223EMBL:AK227043EMBL:AY072173
EMBL:AY084649EMBL:AY122929EMBL:CP002684EnsemblPlants:AT1G16210
EnsemblPlants:AT1G16210.1entrez:838189GeneID:838189Gramene:AT1G16210.1
hmmpanther:PTHR21680hmmpanther:PTHR21680:SF0HOGENOM:HOG000204343InterPro:IPR010422
KEGG:ath:AT1G16210ncoils:CoilOMA:TKKATQEPANTHER:PTHR21680:SF0
Pfam:PF06244PhylomeDB:Q8VYC9Proteomes:UP000006548RefSeq:NP_563993.1
STRING:3702.AT1G16210.1TAIR:AT1G16210UniGene:At.20382UniProt:Q8VYC9
Coordinates (TAIR10) chr1:-:5546352..5547447
Molecular Weight (calculated) 26827.80 Da
IEP (calculated) 9.92
GRAVY (calculated) -1.24
Length 234 amino acids
Sequence (TAIR10)
(BLAST)
001: MPKKMGLNSK AEVAKSRKNA AEAEQKDRQT REKEEQYWRE AEGPKSKAVK KREEEAEKKA ETAAKKLEAK RLAEQEEKEL EKALKKPDKK ANRVTVPVPK
101: VTEAELIRRR EEDQVALAKK AEDSKKKQTR MAGEDEYEKM VLVTNTNRDD SLIEAHTVDE ALARITVSDN LPVDRHPEKR LKASFKAYEE VELPRLKSEK
201: PGLTHTQYKD LIWKMWKKSP DNPLNQAAAA AANE
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)