AT3G11080.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:extracellular 0.898 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : receptor like protein 35 | ||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
receptor like protein 35 (RLP35); FUNCTIONS IN: kinase activity; INVOLVED IN: signal transduction, defense response; LOCATED IN: endomembrane system; EXPRESSED IN: stem, stamen; EXPRESSED DURING: 4 anthesis; CONTAINS InterPro DOMAIN/s: Leucine-rich repeat-containing N-terminal domain, type 2 (InterPro:IPR013210), Leucine-rich repeat (InterPro:IPR001611); BEST Arabidopsis thaliana protein match is: receptor like protein 34 (TAIR:AT3G11010.1); Has 143109 Blast hits to 35332 proteins in 1251 species: Archae - 53; Bacteria - 12845; Metazoa - 35908; Fungi - 1531; Plants - 81557; Viruses - 21; Other Eukaryotes - 11194 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:+:3470481..3473312 | ||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 104789.00 Da | ||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.28 | ||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.13 | ||||||||||||||||||||||||||||||||||||||||
| Length | 943 amino acids | ||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MTGSWNPTSI IIPVTLSFLL SFIHNFADVV AAPTRHLCLP EQRDALLELK NEFEIGKPSS NDYCYRNNSR VSPHPTTESW RNNSDCCNWE GITCDTKSGE 101: VIELDLSCSW LYGSFHSNSS LFRLQNLRVL DLTQNDLDGE IPSSIGNLSH LTSLHLSYNQ FLGLIPSSIE NLSRLTSLHL SSNQFSGQIP SSIGNLSHLT 201: SLELSSNQFS GQIPSSIGNL SNLTFLSLPS NDFFGQIPSS IGNLARLTYL YLSYNNFVGE IPSSFGNLNQ LIVLQVDSNK LSGNVPISLL NLTRLSALLL 301: SHNQFTGTIP NNISLLSNLM DFEASNNAFT GTLPSSLFNI PPLIRLDLSD NQLNGTLHFG NISSPSNLQY LIIGSNNFIG TIPRSLSRFV NLTLFDLSHL 401: NTQCRPVDFS IFSHLKSLDD LRLSYLTTTT IDLNDILPYF KTLRSLDISG NLVSATNKSS VSSDPPSQSI QSLYLSGCGI TDFPEILRTQ HELGFLDVSN 501: NKIKGQVPGW LWTLPNLFYL NLSNNTFISF ESSSKKHGLS SVRKPSMIHL FASNNNFTGK IPSFICGLRS LNTLDLSENN YNGSIPRCME KLKSTLFVLN 601: LRQNNLSGGL PKHIFESLRS LDVGHNLLVG KLPRSLIRFS NLEVLNVESN RINDTFPFWL SSLSKLQVLV LRSNAFHGPI HEATFPELRI IDISHNHFNG 701: TLPTEYFVKW SAMSSLGKNE DQSNEKYMGS GLYYQDSMVL MNKGLAMELV RILTIYTALD FSGNKFEGEI PKSIGLLKEL LVLNLSNNAF GGHIPSSMGN 801: LTALESLDVS QNKLTGEIPQ ELGDLSFLAY MNFSHNQLAG LVPGGTQFRR QNCSAFENNL GLFGPSLDEV CRDKHTPASQ QNETTETEEE DEEEISWIAA 901: AIGFIPGIVF GLTIGYILVS YKPEWFMNPF GRNNRRRRNT TTH |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)