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AT2G39100.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plastid 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : RING/U-box superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
RING/U-box superfamily protein; FUNCTIONS IN: zinc ion binding; EXPRESSED IN: leaf; EXPRESSED DURING: LP.04 four leaves visible; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type, conserved site (InterPro:IPR017907), Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); Has 1875 Blast hits to 1873 proteins in 229 species: Archae - 0; Bacteria - 0; Metazoa - 654; Fungi - 156; Plants - 687; Viruses - 149; Other Eukaryotes - 229 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410XQZReggNOG:KOG4430EMBL:AY065197EMBL:AY081521
EMBL:CP002685EnsemblPlants:AT2G39100EnsemblPlants:AT2G39100.1entrez:818496
Gene3D:3.30.40.10GeneID:818496GO:GO:0008270Gramene:AT2G39100.1
hmmpanther:PTHR22937hmmpanther:PTHR22937:SF50HOGENOM:HOG000093087IntAct:Q8VZ73
InterPro:IPR001841InterPro:IPR013083InterPro:IPR017907KEGG:ath:AT2G39100
OMA:WHELRCFPfam:PF13639Pfscan:PS50089PhylomeDB:Q8VZ73
PROSITE:PS00518PROSITE:PS50089Proteomes:UP000006548RefSeq:NP_850310.1
scanprosite:PS00518SMART:SM00184SMR:Q8VZ73STRING:3702.AT2G39100.1
SUPFAM:SSF57850TAIR:AT2G39100UniGene:At.20141UniGene:At.37212
UniProt:Q8VZ73
Coordinates (TAIR10) chr2:+:16317462..16318869
Molecular Weight (calculated) 34426.30 Da
IEP (calculated) 10.32
GRAVY (calculated) -0.51
Length 296 amino acids
Sequence (TAIR10)
(BLAST)
001: MPPLPSSTAP SSSRHLRSPE SIAKFAGRAI FPALQGKSCP ICLENLTERR SAAVITVCKH GYCLACIRKW SSFKRNCPLC NTRFDSWFIV SDFASRKYHK
101: EQLPILRDRE TLTYHRNNPS DRRRIIQRSR DVLENSSSRS RPLPWRRSFG RPGSVPDSVI FQRKLQWRAS IYTKQLRAVR LHSRRLELSL AVNDYTKAKI
201: TERIEPWIRR ELQAVLGDPD PSVIVHFASA LFIKRLEREN NRQTGQTGML VEDEVSSLRK FLSDKVDIFW HELRCFAESI LTMETYDAVV EYNEVE
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)