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AT2G42160.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : zinc finger (ubiquitin-hydrolase) domain-containing protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
BRAP2 RING ZnF UBP domain-containing protein 1 (BRIZ1); FUNCTIONS IN: catalytic activity, zinc ion binding; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: BRCA1-associated 2 (InterPro:IPR011422), Zinc finger, UBP-type (InterPro:IPR001607), Zinc finger, RING-type (InterPro:IPR001841); BEST Arabidopsis thaliana protein match is: zinc finger (C3HC4-type RING finger) family protein (TAIR:AT2G26000.2); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410XSS2eggNOG:KOG0804EMBL:CP002685EMBL:HQ127733
EnsemblPlants:AT2G42160EnsemblPlants:AT2G42160.1entrez:818816Gene3D:3.30.40.10
GeneID:818816GO:GO:0000151GO:GO:0004842GO:GO:0008270
GO:GO:0010029GO:GO:0016567GO:GO:0043130GO:GO:0046982
Gramene:AT2G42160.1hmmpanther:PTHR24007hmmpanther:PTHR24007:SF8InterPro:IPR001607
InterPro:IPR001841InterPro:IPR011422InterPro:IPR013083InterPro:IPR033273
KEGG:ath:AT2G42160KO:K10632ncoils:CoilOMA:KFSIKLQ
PANTHER:PTHR24007:SF8Pfam:PF02148Pfam:PF07576Pfscan:PS50089
Pfscan:PS50271ProDom:PD017029PROSITE:PS50089PROSITE:PS50271
Proteomes:UP000006548RefSeq:NP_181746.2SMART:SM00290SMR:E5KGE0
STRING:3702.AT2G42160.1SUPFAM:SSF57850TAIR:AT2G42160tair10-symbols:BRIZ1
UniGene:At.42743UniGene:At.42745UniProt:E5KGE0
Coordinates (TAIR10) chr2:-:17574843..17577397
Molecular Weight (calculated) 55218.40 Da
IEP (calculated) 5.52
GRAVY (calculated) -0.43
Length 488 amino acids
Sequence (TAIR10)
(BLAST)
001: MFILRVHSVD SERPISVEEE ESGFTYASKR AQPPLKLIQP SLKLTDRKGL IHLYRKSSHS SLPNPSSRST TLFIVAVPNY LSSLDFIRFC DSRISQVSDI
101: LFIRNDGMED RYSVLITFSD QSEADGFYNN LNGKKFAPSE AEVCHILYVM SVEHTEFDEV AAEAPTGFTE LPTCPICLER LDPDTSGIVS TLCDHSFQCS
201: CTSKWTYLSC QVCRLCQQQD EILNCSICGK TENVWACLVC GFVGCGRYKE GHSIRHWKET HHCYSLDLRT QQIWDYVGDS YVHRLNHSKI DGKSVEMSTS
301: CLSHQGDCGL CECSEDTGIS GAIFNSKVDS IVIEYNDLLA SQLKGQRQYY ESLIVEARSK QESSIAEAVE QIVVNTMQEL QNKIEKCEEE KSGITEVNTK
401: LIKEQDTWRK KAKEIEEREA ALLGSKDEMI TDLQEQIRDI TVFIEAKKTL KKMSSDTDGI REGTVLPVPI SPEPVSSVRR QKKSNRRK
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)