AT2G42160.1
Subcellular Consensus
(Prediction and Experimental) min: :max .
SUBAcon:nucleus 1.000 What is SUBAcon? |
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Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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Description (TAIR10) | protein_coding : zinc finger (ubiquitin-hydrolase) domain-containing protein | ||||||||||||||||||||||||||||||||||||||||||||||||
Curator Summary (TAIR10) |
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Computational Description (TAIR10) |
BRAP2 RING ZnF UBP domain-containing protein 1 (BRIZ1); FUNCTIONS IN: catalytic activity, zinc ion binding; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: BRCA1-associated 2 (InterPro:IPR011422), Zinc finger, UBP-type (InterPro:IPR001607), Zinc finger, RING-type (InterPro:IPR001841); BEST Arabidopsis thaliana protein match is: zinc finger (C3HC4-type RING finger) family protein (TAIR:AT2G26000.2); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||
Protein Annotations |
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Coordinates (TAIR10) | chr2:-:17574843..17577397 | ||||||||||||||||||||||||||||||||||||||||||||||||
Molecular Weight (calculated) | 55218.40 Da | ||||||||||||||||||||||||||||||||||||||||||||||||
IEP (calculated) | 5.52 | ||||||||||||||||||||||||||||||||||||||||||||||||
GRAVY (calculated) | -0.43 | ||||||||||||||||||||||||||||||||||||||||||||||||
Length | 488 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||
Sequence (TAIR10) (BLAST) |
001: MFILRVHSVD SERPISVEEE ESGFTYASKR AQPPLKLIQP SLKLTDRKGL IHLYRKSSHS SLPNPSSRST TLFIVAVPNY LSSLDFIRFC DSRISQVSDI 101: LFIRNDGMED RYSVLITFSD QSEADGFYNN LNGKKFAPSE AEVCHILYVM SVEHTEFDEV AAEAPTGFTE LPTCPICLER LDPDTSGIVS TLCDHSFQCS 201: CTSKWTYLSC QVCRLCQQQD EILNCSICGK TENVWACLVC GFVGCGRYKE GHSIRHWKET HHCYSLDLRT QQIWDYVGDS YVHRLNHSKI DGKSVEMSTS 301: CLSHQGDCGL CECSEDTGIS GAIFNSKVDS IVIEYNDLLA SQLKGQRQYY ESLIVEARSK QESSIAEAVE QIVVNTMQEL QNKIEKCEEE KSGITEVNTK 401: LIKEQDTWRK KAKEIEEREA ALLGSKDEMI TDLQEQIRDI TVFIEAKKTL KKMSSDTDGI REGTVLPVPI SPEPVSSVRR QKKSNRRK |
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See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)