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AT5G17810.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data no PPI data
Description (TAIR10) protein_coding : WUSCHEL related homeobox 12
Curator
Summary (TAIR10)
Encodes a WUSCHEL-related homeobox gene family member with 65 amino acids in its homeodomain. Proteins in this family contain a sequence of eight residues (TLPLFPMH) downstream of the homeodomain called the WUS box.
Computational
Description (TAIR10)
WUSCHEL related homeobox 12 (WOX12); FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; CONTAINS InterPro DOMAIN/s: Homeobox (InterPro:IPR001356), Homeodomain-like (InterPro:IPR009057); BEST Arabidopsis thaliana protein match is: WUSCHEL related homeobox 11 (TAIR:AT3G03660.2); Has 533 Blast hits to 523 proteins in 47 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 0; Plants - 532; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
BioGrid:16925eggNOG:ENOG410IX27eggNOG:ENOG410YGSGEMBL:AB006706
EMBL:AK117910EMBL:AY251403EMBL:BT006232EMBL:CP002688
EnsemblPlants:AT5G17810EnsemblPlants:AT5G17810.1EnsemblPlants:AT5G17810.2entrez:831649
Gene3D:1.10.10.60GeneID:831649GO:GO:0003677GO:GO:0003700
GO:GO:0005634GO:GO:0006351GO:GO:0048830Gramene:AT5G17810.1
Gramene:AT5G17810.2hmmpanther:PTHR24326hmmpanther:PTHR24326:SF280HOGENOM:HOG000064623
InParanoid:Q8GY25IntAct:Q8GY25InterPro:IPR001356InterPro:IPR009057
KEGG:ath:AT5G17810OMA:KMYGHESPaxDb:Q8GY25Pfam:PF00046
Pfam:Q8GY25Pfscan:PS50071PhylomeDB:Q8GY25PRO:PR:Q8GY25
PROSITE:PS50071ProteinModelPortal:Q8GY25Proteomes:UP000006548RefSeq:NP_001190327.1
RefSeq:NP_197283.2SMART:SM00389STRING:3702.AT5G17810.1SUPFAM:SSF46689
TAIR:AT5G17810tair10-symbols:WOX12UniGene:At.31506UniProt:Q8GY25
Coordinates (TAIR10) chr5:-:5880576..5882602
Molecular Weight (calculated) 29715.60 Da
IEP (calculated) 6.57
GRAVY (calculated) -0.58
Length 268 amino acids
Sequence (TAIR10)
(BLAST)
001: MNQEGASHSP SSTSTEPVRA RWSPKPEQIL ILESIFNSGT VNPPKDETVR IRKMLEKFGA VGDANVFYWF QNRRSRSRRR HRQLLAATTA AATSIGAEDH
101: QHMTAMSMHQ YPCSNNEIDL GFGSCSNLSA NYFLNGSSSS QIPSFFLGLS SSSGGCENNN GMENLFKMYG HESDHNHQQQ HHSSNAASVL NPSDQNSNSQ
201: YEQEGFMTVF INGVPMEVTK GAIDMKTMFG DDSVLLHSSG LPLPTDEFGF LMHSLQHGQT YFLVPRQT
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)