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AT1G14740.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:28865150 (2017): extracellular region plant-type cell wall
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Protein of unknown function (DUF1423)
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Protein of unknown function (DUF1423); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1423, plant (InterPro:IPR004082); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF1423) (TAIR:AT3G63500.1); Has 415 Blast hits to 414 proteins in 82 species: Archae - 3; Bacteria - 32; Metazoa - 64; Fungi - 8; Plants - 255; Viruses - 0; Other Eukaryotes - 53 (source: NCBI BLink).
Protein Annotations
BioGrid:23279eggNOG:ENOG410IIXPeggNOG:ENOG410ZKIBEMBL:AC006917
EMBL:AY042810EMBL:AY081688EMBL:CP002684EnsemblPlants:AT1G14740
EnsemblPlants:AT1G14740.1entrez:838039GeneID:838039Genevisible:Q94B71
GO:GO:0001708GO:GO:0005634GO:GO:0009880GO:GO:0046872
GO:GO:0090421Gramene:AT1G14740.1hmmpanther:PTHR21736hmmpanther:PTHR21736:SF15
HOGENOM:HOG000239893InParanoid:Q94B71IntAct:Q94B71InterPro:IPR004082
InterPro:IPR032535InterPro:IPR032881iPTMnet:Q94B71KEGG:ath:AT1G14740
ncoils:CoilOMA:SYLCENSPaxDb:Q94B71Pfam:PF07227
Pfam:PF16312Pfam:Q94B71PhylomeDB:Q94B71PIR:F86281
PRIDE:Q94B71PRINTS:PR01544PRO:PR:Q94B71ProteinModelPortal:Q94B71
Proteomes:UP000006548RefSeq:NP_563958.1STRING:3702.AT1G14740.1TAIR:AT1G14740
UniGene:At.24757UniGene:At.72881UniProt:Q94B71
Coordinates (TAIR10) chr1:-:5075450..5077732
Molecular Weight (calculated) 82393.60 Da
IEP (calculated) 6.83
GRAVY (calculated) -0.60
Length 733 amino acids
Sequence (TAIR10)
(BLAST)
001: MIGEKDLAGD GECSRTKTSK PRFSNLNNQT HQDDKTGQYH QKGVDFLNVR SNNLDGGFSS KSSPRSGNEL TLSYLCENSG KLAESLGQKG KEVVTFSENS
101: SYDDKWVERD FFNLREMNPN SSKRKAHEEE EEAEEEEDKK SNKIETLNLS LALPDVSLSL TASNAVKRPR VVTSERTTTS FSNDFTATAP SMSYSYSHPF
201: SHNISCSMTR NSTDFDCSVG KDDHIWCAGE GTNGSVHSRF RPIGDGGVAL ANNPVSGKPS SSADYSFFPS ELPARPGNEV TISGDSRKKV ANLEDNDAVR
301: SERVLYDIVS KSISSVALII QGMADETLES AKEYLRNLID SPEKKEKLVN LQNQIDKRSD LSKETLSKCV KDQLDILVAV RTGLKYFLSG KIRIPMNELV
401: EIFLFLRCRN VNCKSLLPVD DCECKICSNN KGFCSSCMCP VCLRFDSASN TCSWVGCDVC SHWCHAACGI QKNLIKPGHS LKGQRGTTEM MFHCIGCAHK
501: SEMFGFVKDV FVCCAKNWGL ETLIKELDCV RKVFRGSDDA KGKALHLKAN EMVKKLESKQ ISPLDASNFI IQFFNYAESI PEIPDPPREL TVAAETSYRK
601: DEASVTPSTS KDQKKKSFAL TDAMMNSFDS LESMVRIKEA ETRMFQKKAD EARIEAESFK RMIEMKTEKM EEEYTEKLAR LCLQETEERR RNKLEELKKL
701: ENSHCDYRNM KLRMEAEIAG LLKRMEVTRQ QLV
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)