AT1G14740.1
Subcellular Consensus
(Prediction and Experimental) min: :max .
SUBAcon:nucleus 1.000 What is SUBAcon? |
|||||||||||||||||||||||||||||||||||||||||||||||||
Experimental Localisations and PPI |
|
||||||||||||||||||||||||||||||||||||||||||||||||
SUBAcon links
AGI-AGI relationships |
|
||||||||||||||||||||||||||||||||||||||||||||||||
Description (TAIR10) | protein_coding : Protein of unknown function (DUF1423) | ||||||||||||||||||||||||||||||||||||||||||||||||
Curator Summary (TAIR10) |
|||||||||||||||||||||||||||||||||||||||||||||||||
Computational Description (TAIR10) |
Protein of unknown function (DUF1423); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1423, plant (InterPro:IPR004082); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF1423) (TAIR:AT3G63500.1); Has 415 Blast hits to 414 proteins in 82 species: Archae - 3; Bacteria - 32; Metazoa - 64; Fungi - 8; Plants - 255; Viruses - 0; Other Eukaryotes - 53 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||
Protein Annotations |
|
||||||||||||||||||||||||||||||||||||||||||||||||
Coordinates (TAIR10) | chr1:-:5075450..5077732 | ||||||||||||||||||||||||||||||||||||||||||||||||
Molecular Weight (calculated) | 82393.60 Da | ||||||||||||||||||||||||||||||||||||||||||||||||
IEP (calculated) | 6.83 | ||||||||||||||||||||||||||||||||||||||||||||||||
GRAVY (calculated) | -0.60 | ||||||||||||||||||||||||||||||||||||||||||||||||
Length | 733 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||
Sequence (TAIR10) (BLAST) |
001: MIGEKDLAGD GECSRTKTSK PRFSNLNNQT HQDDKTGQYH QKGVDFLNVR SNNLDGGFSS KSSPRSGNEL TLSYLCENSG KLAESLGQKG KEVVTFSENS 101: SYDDKWVERD FFNLREMNPN SSKRKAHEEE EEAEEEEDKK SNKIETLNLS LALPDVSLSL TASNAVKRPR VVTSERTTTS FSNDFTATAP SMSYSYSHPF 201: SHNISCSMTR NSTDFDCSVG KDDHIWCAGE GTNGSVHSRF RPIGDGGVAL ANNPVSGKPS SSADYSFFPS ELPARPGNEV TISGDSRKKV ANLEDNDAVR 301: SERVLYDIVS KSISSVALII QGMADETLES AKEYLRNLID SPEKKEKLVN LQNQIDKRSD LSKETLSKCV KDQLDILVAV RTGLKYFLSG KIRIPMNELV 401: EIFLFLRCRN VNCKSLLPVD DCECKICSNN KGFCSSCMCP VCLRFDSASN TCSWVGCDVC SHWCHAACGI QKNLIKPGHS LKGQRGTTEM MFHCIGCAHK 501: SEMFGFVKDV FVCCAKNWGL ETLIKELDCV RKVFRGSDDA KGKALHLKAN EMVKKLESKQ ISPLDASNFI IQFFNYAESI PEIPDPPREL TVAAETSYRK 601: DEASVTPSTS KDQKKKSFAL TDAMMNSFDS LESMVRIKEA ETRMFQKKAD EARIEAESFK RMIEMKTEKM EEEYTEKLAR LCLQETEERR RNKLEELKKL 701: ENSHCDYRNM KLRMEAEIAG LLKRMEVTRQ QLV |
||||||||||||||||||||||||||||||||||||||||||||||||
See Also |
|
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)