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AT3G61740.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : SET domain protein 14
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
SET domain protein 14 (SDG14); FUNCTIONS IN: DNA binding, zinc ion binding; INVOLVED IN: regulation of transcription, DNA-dependent; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: SET domain (InterPro:IPR001214), Zinc finger, PHD-type, conserved site (InterPro:IPR019786), Zinc finger, PHD-type (InterPro:IPR001965), Post-SET domain (InterPro:IPR003616), PWWP (InterPro:IPR000313), Zinc finger, FYVE/PHD-type (InterPro:IPR011011), Zinc finger, PHD-finger (InterPro:IPR019787); BEST Arabidopsis thaliana protein match is: SET domain group 29 (TAIR:AT5G53430.1); Has 7747 Blast hits to 7403 proteins in 492 species: Archae - 2; Bacteria - 431; Metazoa - 3506; Fungi - 851; Plants - 1524; Viruses - 0; Other Eukaryotes - 1433 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT3G61740-MONOMERBioCyc:ARA:GQT-257-MONOMERBioGrid:10661EC:2.1.1.43
eggNOG:COG2940eggNOG:COG5141eggNOG:KOG1080EMBL:AB493660
EMBL:AK227351EMBL:AL132959EMBL:CP002686EnsemblPlants:AT3G61740
EnsemblPlants:AT3G61740.1entrez:825347ExpressionAtlas:Q9M364Gene3D:3.30.40.10
GeneID:825347Genevisible:Q9M364GO:GO:0003677GO:GO:0005634
GO:GO:0008270GO:GO:0018024hmmpanther:PTHR13793hmmpanther:PTHR13793:SF92
HOGENOM:HOG000030707InParanoid:Q9M364InterPro:IPR000313InterPro:IPR000770
InterPro:IPR001214InterPro:IPR001965InterPro:IPR003616InterPro:IPR011011
InterPro:IPR013083InterPro:IPR019786InterPro:IPR019787InterPro:IPR025780
iPTMnet:Q9M364OMA:EMIIEYRPaxDb:Q9M364Pfam:PF00628
Pfam:PF00855Pfam:PF00856Pfam:PF01342Pfam:PF13831
Pfam:PF13832Pfam:Q9M364Pfscan:PS50016Pfscan:PS50280
Pfscan:PS50812Pfscan:PS50868Pfscan:PS51566PhylomeDB:Q9M364
PIR:T47966PRIDE:Q9M364PRO:PR:Q9M364PROSITE:PS01359
PROSITE:PS50016PROSITE:PS50280PROSITE:PS50812PROSITE:PS50868
PROSITE:PS51566ProteinModelPortal:Q9M364Proteomes:UP000006548RefSeq:NP_191733.3
scanprosite:PS01359SMART:SM00249SMART:SM00293SMART:SM00317
SMART:SM00508STRING:3702.AT3G61740.1SUPFAM:SSF57903SUPFAM:SSF63748
SUPFAM:SSF82199TAIR:AT3G61740tair10-symbols:ATX3tair10-symbols:SDG14
UniGene:At.47229UniProt:Q9M364
Coordinates (TAIR10) chr3:-:22851133..22856548
Molecular Weight (calculated) 115694.00 Da
IEP (calculated) 7.98
GRAVY (calculated) -0.54
Length 1018 amino acids
Sequence (TAIR10)
(BLAST)
0001: MILKRTLTTF ENQNLKRCKI DSEIEYGRKK GEIIVYKKRQ RATVDQPCSK EPELLTSSSS SLTSKEESQQ VCSDQSKSSR GRVRAVPSRF KDSIVGTWKS
0101: SRRKGESTES SHDDDDVSLG KKVKGFSGSS KLHRSKDSKV FPRKDNGDSS EVDCDYWDVQ ISYDDANFGM PKKSDASRKG VYKPEEFTVG DLVWAKCGKR
0201: FPAWPAVVID PISQAPDGVL KHCVPGAICV MFFGYSKDGT QRDYAWVRQG MVYPFTEFMD KFQDQTNLFN YKASEFNKAL EEAVLAENGN FGDAEIISPD
0301: SSATESDQDY GPASRFQGSY HEDIRTCDGC GSVMPLKSLK RTKDSQPEEL LCKHCSKLRK SNQYCGICKR IWHPSDDGDW VCCDGCDVWV HAECDNITNE
0401: RFKELEHNNY YCPDCKVQHE LTPTILEEQN SVFKSTEKTT ETGLPDAITV VCNGMEGTYI RKFHAIECKC GSCGSRKQSP SEWERHTGCR AKKWKYSVRV
0501: KDTMLPLEKW IAEFSTYTLE TQMLDKQKML SLLEEKYEPV RAKWTTERCA VCRWVEDWEE NKMIICNRCQ VAVHQECYGV SKSQDLTSWV CRACETPDIE
0601: RDCCLCPVKG GALKPSDVEG LWVHVTCAWF RPEVGFLNHE NMEPAVGLFK IPANSFLKVC TICKQTHGSC VHCCKCATHF HAMCASRAGY NMELHCLEKN
0701: GVQRTRKSVY CSFHRKPDPD SVVVVHTPSG VFGSRNLLQN QYGRAKGSRL VLTKKMKLPG FQTQTQAEQS RVFDSLSAAR CRIYSRSNTK IDLEAISHRL
0801: KGPSHHSLSA IENLNSFKAS FSFRAPFMSV FCFLGATFSE YLRKILISIY LVTHQEADFT SFRERLKHLQ RTENFRVCFG KSGIHGWGLF ARKSIQEGEM
0901: IIEYRGVKVR RSVADLREAN YRSQGKDCYL FKISEEIVID ATDSGNIARL INHSCMPNCY ARIVSMGDGE DNRIVLIAKT NVAAGEELTY DYLFEVDESE
1001: EIKVPCLCKA PNCRKFMN
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)