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AT1G14570.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:26572690 (2016): extracellular region plant-type cell wall
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : UBX domain-containing protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
UBX domain-containing protein; CONTAINS InterPro DOMAIN/s: UAS (InterPro:IPR006577), Uncharacterised conserved protein UCP037991, UAS, UBX (InterPro:IPR017346), UBX (InterPro:IPR001012), Ubiquitin interacting motif (InterPro:IPR003903), UBA-like (InterPro:IPR009060), Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis thaliana protein match is: structural constituent of ribosome (TAIR:AT4G14250.2); Has 594 Blast hits to 577 proteins in 178 species: Archae - 0; Bacteria - 4; Metazoa - 212; Fungi - 143; Plants - 155; Viruses - 0; Other Eukaryotes - 80 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410XSZZeggNOG:KOG1364EMBL:AC010657EMBL:AF370507
EMBL:AK317323EMBL:AY064683EMBL:CP002684EnsemblPlants:AT1G14570
EnsemblPlants:AT1G14570.1EnsemblPlants:AT1G14570.2entrez:838019ExpressionAtlas:Q94JZ8
Gene3D:3.40.30.10GeneID:838019Genevisible:Q94JZ8GO:GO:0005634
GO:GO:0030674hmmpanther:PTHR23322hmmpanther:PTHR23322:SF6HOGENOM:HOG000015171
IntAct:Q94JZ8InterPro:IPR001012InterPro:IPR003903InterPro:IPR006577
InterPro:IPR009060InterPro:IPR012336InterPro:IPR017346InterPro:IPR029071
OMA:RGWNGMVPaxDb:Q94JZ8Pfam:PF00789Pfam:PF13899
Pfam:PF14555Pfam:Q94JZ8Pfscan:PS50033Pfscan:PS50330
PhylomeDB:Q94JZ8PIR:D86280PIRSF:PIRSF037991PRIDE:Q94JZ8
PRO:PR:Q94JZ8PROSITE:PS50033PROSITE:PS50330ProteinModelPortal:Q94JZ8
Proteomes:UP000006548RefSeq:NP_563954.1RefSeq:NP_973827.1SMART:SM00594
SMR:Q94JZ8STRING:3702.AT1G14570.1SUPFAM:SSF46934SUPFAM:SSF52833
SUPFAM:SSF54236TAIR:AT1G14570UniGene:At.19055UniProt:Q94JZ8
Coordinates (TAIR10) chr1:+:4983770..4987192
Molecular Weight (calculated) 51810.40 Da
IEP (calculated) 4.36
GRAVY (calculated) -0.53
Length 468 amino acids
Sequence (TAIR10)
(BLAST)
001: MEGMLSSGDQ QRLVSSFLEI AVGQTAETAR QFLQATSWKL EEAIQLFYIG NEGGMLQSGT HTQPASNDDA AAQSWGAATG TGNEMILPND VDEVRAPLPV
101: VRETLYGESM YYGAMRVGNS QPEPNSLIAF RNFSEEPKSP GIWEPDEGDS SASASASASA SESASAPRDS LASLYRPPFH LMFQGSFEQA KTTSSSQDKW
201: LLVNLQSTTE FSSHMLNRDT WANDAVSQTI KANFIFWQVY DDTTEGRKVC TYYKLESIPV VLVIDPTTGQ RMRMWTGMVD PENLLEDLVP FMDGGPREHF
301: ASLSKKRPRG SFSLTPHSKP KEDVAKDEEE EELQRALAAS LEDNNMKESS DDQSTIIPEE VAVEAVTSAV LPTFPPLPEE PKGGDRSLQC RVGIRLPNGQ
401: RLQRNFLKTD TIQLLWSFCY SQLEESERKK PLKLTQAIPG ESKTLEYESN LTLEQSGVAN SMISATWE
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)