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AT5G16840.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 0.952
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:30961429 (2019): nucleus
  • PMID:26572690 (2016): extracellular region plant-type cell wall
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:23549413 (2013): plastid
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : binding partner of acd11 1
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
binding partner of acd11 1 (BPA1); FUNCTIONS IN: oxidoreductase activity, nucleotide binding, nucleic acid binding; INVOLVED IN: oxidation reduction; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Aldo/keto reductase (InterPro:IPR001395), RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: RNA-binding (RRM/RBD/RNP motifs) family protein (TAIR:AT4G17720.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IT6EeggNOG:ENOG4111ICIEMBL:AK318634EMBL:AL391147
EMBL:AY058146EMBL:AY094058EMBL:CP002688EnsemblPlants:AT5G16840
EnsemblPlants:AT5G16840.1EnsemblPlants:AT5G16840.2EnsemblPlants:AT5G16840.3entrez:831547
ExpressionAtlas:Q9LFD5Gene3D:3.30.70.330GeneID:831547Genevisible:Q9LFD5
GO:GO:0000166GO:GO:0003723GO:GO:0005737GO:GO:0016020
InParanoid:A8MSB5IntAct:Q9LFD5InterPro:IPR000504InterPro:IPR012677
iPTMnet:Q9LFD5KEGG:ath:AT5G16840OMA:HAQENTAPaxDb:Q9LFD5
Pfam:PF00076Pfam:Q9LFD5Pfscan:PS50102PhylomeDB:Q9LFD5
PIR:T51516PRIDE:Q9LFD5PRO:PR:Q9LFD5PROSITE:PS50102
ProteinModelPortal:Q9LFD5Proteomes:UP000006548RefSeq:NP_001078595.1RefSeq:NP_001078596.1
RefSeq:NP_197186.1SMART:SM00360SMR:Q9LFD5STRING:3702.AT5G16840.2
SUPFAM:SSF54928TAIR:AT5G16840tair10-symbols:BPA1UniGene:At.49030
UniProt:Q9LFD5
Coordinates (TAIR10) chr5:+:5536042..5538026
Molecular Weight (calculated) 27235.60 Da
IEP (calculated) 5.37
GRAVY (calculated) -0.33
Length 259 amino acids
Sequence (TAIR10)
(BLAST)
001: MASQVRSVKV GNLSSGATEH DIKEFFSFSG EVESIDIQSN EHSAYVTFKE TQGAETAVLL SGASIADQSV IIELAPNYSP PAAPHAETQS SGAESVVQKA
101: EDVVSSMLAK GFILGKDAVG KAKAFDEKHG FTSTATAGVA SLDQKIGLSQ KLTAGTSLVN EKIKAVDQNF QVTERTKSVY AAAEQTVSSA GSAVMKNRYV
201: LTGVSWAAGA FNRVAQAAGE VGQKTKEKVE AEQPSQPAQS QQQLPEGYSP IHSSEYSKN
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)