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AT4G11400.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:14760709 (2004): plant-type vacuole
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data
Description (TAIR10) protein_coding : ARID/BRIGHT DNA-binding domain;ELM2 domain protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
ARID/BRIGHT DNA-binding domain;ELM2 domain protein; FUNCTIONS IN: DNA binding; LOCATED IN: vacuole; CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), ELM2 (InterPro:IPR000949), ARID/BRIGHT DNA-binding domain (InterPro:IPR001606); BEST Arabidopsis thaliana protein match is: ARID/BRIGHT DNA-binding domain;ELM2 domain protein (TAIR:AT2G46040.1); Has 254 Blast hits to 233 proteins in 47 species: Archae - 0; Bacteria - 0; Metazoa - 84; Fungi - 4; Plants - 166; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IX5CeggNOG:ENOG410YHCTEMBL:AL050399EMBL:AL161531
EMBL:CP002687EMBL:DQ446818EnsemblPlants:AT4G11400EnsemblPlants:AT4G11400.1
entrez:826744Gene3D:1.10.150.60GeneID:826744Genevisible:Q9LDD4
GO:GO:0003677GO:GO:0005634GO:GO:0005773GO:GO:0006351
GO:GO:0006355Gramene:AT4G11400.1hmmpanther:PTHR22970HOGENOM:HOG000240640
InParanoid:Q9LDD4InterPro:IPR000949InterPro:IPR001606KEGG:ath:AT4G11400
PaxDb:Q9LDD4Pfam:PF01388Pfam:Q9LDD4Pfscan:PS51011
Pfscan:PS51156PhylomeDB:Q9LDD4PIR:T10560PRIDE:Q9LDD4
PRO:PR:Q9LDD4PROSITE:PS51011PROSITE:PS51156ProteinModelPortal:Q9LDD4
Proteomes:UP000006548RefSeq:NP_192879.1SMART:SM00501SMART:SM01189
SMR:Q9LDD4STRING:3702.AT4G11400.1SUPFAM:SSF46774TAIR:AT4G11400
UniGene:At.54272UniProt:Q9LDD4
Coordinates (TAIR10) chr4:+:6938717..6940539
Molecular Weight (calculated) 65669.70 Da
IEP (calculated) 7.81
GRAVY (calculated) -0.64
Length 573 amino acids
Sequence (TAIR10)
(BLAST)
001: MGSFNDTSCS YVDVEIKYVD ECEERLRRLF DQALLVFLEE EGSIKPLPAV IGDGKNVDLF KLFVLVRERE GFDTVSRKRL WEVVAEKLGF DCSLVPSLIL
101: IYLKYLNRME KWAVEESRIV NWDNKDSEKK GCYSGMLHEL GNGFKSLLDN GKCQKRNRAV AFGCNHMEES CSEFDRSRKR FRESDDDDKG VGLSSVVIRE
201: ETVVCAVEEG LSDFSLEKRD DLPGMLKWLA LVATSPHDPA IGVIPHSSKW KQYNGNKCWL QVARAKNSLL VQRDNAELRY RYHPFRGHQN IHHPSMYEDD
301: RKSIGRLRYS IRPPNLSKHC SSSCCNGSSL VSLSKSRSTK CRKLTIIASE RAGLTAGTSR ARKRNKAEIP RRCIKVGHQH QAQVDEWTES GVDSDSKWLG
401: TRIWPPENSE ALDQTLGNDL VGKGRPDSCS CELSGFVECT RLHIAEKRME LKRELGDDFF HWRFNQMGEE VCLRWTEEEE KRFKDMIIAD PQSFWTNAAK
501: NFPKKKREEL VSYYFNVFLI NRRRYQNRVT PKSIDSDDEG AFGSVGGSFG RDAVTSSGSD VMICAQNRQC EDY
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)