AT4G30980.1
Subcellular Consensus
(Prediction and Experimental) min: :max .
SUBAcon:nucleus 1.000 ASURE: nucleus What is SUBAcon? |
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Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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Description (TAIR10) | protein_coding : LJRHL1-like 2 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
Curator Summary (TAIR10) |
Encodes a basic helix-loop-helix (bHLH) protein that regulates root hair development. One of the three Arabidopsis homologs of the Lotus japonicus ROOTHAIRLESS1 (LjRHL1) gene: At2g24260 (AtLRL1), At4g30980 (AtLRL2), and At5g58010 (AtLRL3). | ||||||||||||||||||||||||||||||||||||||||||||||||||||
Computational Description (TAIR10) |
LJRHL1-like 2 (LRL2); FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: root hair cell development, regulation of transcription; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: Helix-loop-helix DNA-binding domain (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: LJRHL1-like 1 (TAIR:AT2G24260.1); Has 3371 Blast hits to 3365 proteins in 149 species: Archae - 0; Bacteria - 0; Metazoa - 112; Fungi - 43; Plants - 3213; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||||||
Protein Annotations |
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Coordinates (TAIR10) | chr4:-:15079489..15081606 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
Molecular Weight (calculated) | 32881.50 Da | ||||||||||||||||||||||||||||||||||||||||||||||||||||
IEP (calculated) | 6.85 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
GRAVY (calculated) | -0.46 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
Length | 310 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sequence (TAIR10) (BLAST) |
001: MNSSSLLTPS SSPSPHLQSP ATFDHDDFLH HIFSSTPWPS SVLDDTPPPT SDCAPVTGFH HHDADSRNQI TMIPLSHNHP NDALFNGFST GSLPFHLPQG 101: SGGQTQTQSQ ATASATTGGA TAQPQTKPKV RARRGQATDP HSIAERLRRE RIAERMKSLQ ELVPNGNKTD KASMLDEIID YVKFLQLQVK VLSMSRLGGA 201: ASASSQISED AGGSHENTSS SGEAKMTEHQ VAKLMEEDMG SAMQYLQGKG LCLMPISLAT TISTATCPSR SPFVKDTGVP LSPNLSTTIV ANGNGSSLVT 301: VKDAPSVSKP |
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See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)