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AT4G30980.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : LJRHL1-like 2
Curator
Summary (TAIR10)
Encodes a basic helix-loop-helix (bHLH) protein that regulates root hair development. One of the three Arabidopsis homologs of the Lotus japonicus ROOTHAIRLESS1 (LjRHL1) gene: At2g24260 (AtLRL1), At4g30980 (AtLRL2), and At5g58010 (AtLRL3).
Computational
Description (TAIR10)
LJRHL1-like 2 (LRL2); FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: root hair cell development, regulation of transcription; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: Helix-loop-helix DNA-binding domain (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: LJRHL1-like 1 (TAIR:AT2G24260.1); Has 3371 Blast hits to 3365 proteins in 149 species: Archae - 0; Bacteria - 0; Metazoa - 112; Fungi - 43; Plants - 3213; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410JATFeggNOG:ENOG4111CIPEMBL:AF488601EMBL:AL022198
EMBL:AL161578EMBL:CP002687EnsemblPlants:AT4G30980EnsemblPlants:AT4G30980.1
entrez:829223ExpressionAtlas:Q8S3D5Gene3D:4.10.280.10GeneID:829223
GO:GO:0001046GO:GO:0001228GO:GO:0003700GO:GO:0005634
GO:GO:0006355GO:GO:0006366GO:GO:0045944GO:GO:0048765
GO:GO:0080147Gramene:AT4G30980.1hmmpanther:PTHR16223hmmpanther:PTHR16223:SF28
HOGENOM:HOG000239571InParanoid:Q8S3D5InterPro:IPR011598KEGG:ath:AT4G30980
OMA:ITMIPLSPaxDb:Q8S3D5Pfam:PF00010Pfam:Q8S3D5
Pfscan:PS50888PhylomeDB:Q8S3D5PIR:G85362PRO:PR:Q8S3D5
PROSITE:PS50888ProteinModelPortal:Q8S3D5Proteomes:UP000006548RefSeq:NP_194827.2
SMART:SM00353SMR:Q8S3D5STRING:3702.AT4G30980.1SUPFAM:SSF47459
TAIR:AT4G30980tair10-symbols:LRL2UniGene:At.31786UniProt:C0SVK8
UniProt:Q8S3D5
Coordinates (TAIR10) chr4:-:15079489..15081606
Molecular Weight (calculated) 32881.50 Da
IEP (calculated) 6.85
GRAVY (calculated) -0.46
Length 310 amino acids
Sequence (TAIR10)
(BLAST)
001: MNSSSLLTPS SSPSPHLQSP ATFDHDDFLH HIFSSTPWPS SVLDDTPPPT SDCAPVTGFH HHDADSRNQI TMIPLSHNHP NDALFNGFST GSLPFHLPQG
101: SGGQTQTQSQ ATASATTGGA TAQPQTKPKV RARRGQATDP HSIAERLRRE RIAERMKSLQ ELVPNGNKTD KASMLDEIID YVKFLQLQVK VLSMSRLGGA
201: ASASSQISED AGGSHENTSS SGEAKMTEHQ VAKLMEEDMG SAMQYLQGKG LCLMPISLAT TISTATCPSR SPFVKDTGVP LSPNLSTTIV ANGNGSSLVT
301: VKDAPSVSKP
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)