suba logo
AT1G63910.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

.
SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data no PPI data
Description (TAIR10) protein_coding : myb domain protein 103
Curator
Summary (TAIR10)
member of MYB3R- and R2R3- type MYB- encoding genes
Computational
Description (TAIR10)
myb domain protein 103 (AtMYB103); CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), HTH transcriptional regulator, Myb-type, DNA-binding (InterPro:IPR017930), Homeodomain-related (InterPro:IPR012287), Myb transcription factor (InterPro:IPR015495); BEST Arabidopsis thaliana protein match is: myb domain protein 26 (TAIR:AT3G13890.2); Has 8923 Blast hits to 8250 proteins in 474 species: Archae - 0; Bacteria - 0; Metazoa - 755; Fungi - 504; Plants - 5899; Viruses - 6; Other Eukaryotes - 1759 (source: NCBI BLink).
Protein Annotations
eggNOG:COG5147eggNOG:KOG0048EMBL:AC010852EMBL:AF214116
EMBL:AK226651EMBL:AY519564EMBL:CP002684EnsemblPlants:AT1G63910
EnsemblPlants:AT1G63910.1entrez:842694Gene3D:1.10.10.60GeneID:842694
GO:GO:0003677GO:GO:0003700GO:GO:0005634GO:GO:0006355
GO:GO:0045893GO:GO:1901430GO:GO:2000652Gramene:AT1G63910.1
hmmpanther:PTHR10641hmmpanther:PTHR10641:SF451HOGENOM:HOG000237600InterPro:IPR001005
InterPro:IPR009057InterPro:IPR017930KEGG:ath:AT1G63910KO:K09422
OMA:NDQETNIPfam:PF00249Pfscan:PS51294PhylomeDB:Q9SRB0
PIR:C96664PROSITE:PS51294Proteomes:UP000006548RefSeq:NP_176575.1
SMART:SM00717SMR:Q9SRB0STRING:3702.AT1G63910.1SUPFAM:SSF46689
TAIR:AT1G63910tair10-symbols:AtMYB103tair10-symbols:MYB103UniGene:At.11888
UniProt:Q9SRB0
Coordinates (TAIR10) chr1:-:23719968..23721625
Molecular Weight (calculated) 42264.80 Da
IEP (calculated) 5.68
GRAVY (calculated) -0.73
Length 370 amino acids
Sequence (TAIR10)
(BLAST)
001: MGHHSCCNQQ KVKRGLWSPE EDEKLIRYIT THGYGCWSEV PEKAGLQRCG KSCRLRWINY LRPDIRRGRF SPEEEKLIIS LHGVVGNRWA HIASHLPGRT
101: DNEIKNYWNS WIKKKIRKPH HHYSRHQPSV TTVTLNADTT SIATTIEAST TTTSTIDNLH FDGFTDSPNQ LNFTNDQETN IKIQETFFSH KPPLFMVDTT
201: LPILEGMFSE NIITNNNKNN DHDDTQRGGR ENVCEQAFLT TNTEEWDMNL RQQEPFQVPT LASHVFNNSS NSNIDTVISY NLPALIEGNV DNIVHNENSN
301: VQDGEMASTF ECLKRQELSY DQWDDSQQCS NFFFWDNLNI NVEGSSLVGN QDPSMNLGSS ALSSSFPSSF
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)