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AT1G55280.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plastid 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Lipase/lipooxygenase, PLAT/LH2 family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Lipase/lipooxygenase, PLAT/LH2 family protein; CONTAINS InterPro DOMAIN/s: Lipase/lipooxygenase, PLAT/LH2 (InterPro:IPR008976); Has 47 Blast hits to 47 proteins in 18 species: Archae - 0; Bacteria - 2; Metazoa - 4; Fungi - 0; Plants - 39; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IWY3eggNOG:ENOG4111ZS5EMBL:BT026470EMBL:CP002684
EnsemblPlants:AT1G55280EnsemblPlants:AT1G55280.1entrez:841973Gene3D:2.60.60.20
GeneID:841973GO:GO:0016021Gramene:AT1G55280.1hmmpanther:PTHR36330
hmmpanther:PTHR36330:SF1InterPro:IPR001024KEGG:ath:AT1G55280OMA:LVCKVAV
Proteomes:UP000006548RefSeq:NP_175924.2SUPFAM:SSF49723TAIR:AT1G55280
TMHMM:TMhelixUniGene:At.37091UniProt:Q0V7V0
Coordinates (TAIR10) chr1:-:20623099..20624533
Molecular Weight (calculated) 43303.30 Da
IEP (calculated) 5.98
GRAVY (calculated) 0.06
Length 390 amino acids
Sequence (TAIR10)
(BLAST)
001: MATESIFLKP VSFAWFTKNP LNQFHKRRQL SYRIRRFRFG VICSKSSDYQ DFQSYARPLR LLPAEEVKVF RGNPSFTVSE SRSLYKVKLQ TSNLFGSGIS
101: DMNARVLICL IDEKGDSVLQ TIPPNLSSLD PEVVENGESF RFQRGSLDEF SFEGPKLGKI RAFWIGLESG QWRVGRVSLW VVNPRGKETE AKTFCYRYDF
201: EVDELLLGES SDLSMVELRP SRITELADSD QISSSSALNL DRTMVSNEES MEEYANLKLS LLLYDAVLIL LGSLVFSFSL GENSAIAFFF GGTMGFLYLL
301: LLQRSVDELQ VPGSSSSENS NQILSGGLKI PVLSLALAIG LTVLAMRGHI GGEMTAFAVT PKEIVVGTLG FLVCKVAVIL AAFKPLKDGP
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)