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AT4G37000.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plastid 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31520498 (2020): mitochondrion
  • PMID:31186290 (2019): plastid plastid stroma
  • PMID:30783145 (2019): extracellular region plant-type cell wall
  • PMID:30135097 (2018): plastid
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:24361574 (2014): plastid plastid stroma
  • PMID:24124904 (2013): plastid
  • PMID:23673981 (2013): plastid plastid stroma plastoglobules
  • PMID:21531424 (2011): plastid
  • PMID:20423899 (2010): plastid
  • PMID:20061580 (2010): plastid plastid stroma
  • PMID:18431481 (2008): plastid plastid stroma
  • PMID:16207701 (2006): plastid
  • PMID:12938931 (2003): plastid
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : accelerated cell death 2 (ACD2)
Curator
Summary (TAIR10)
Mutants have spontaneous spreading cell death lesions and constitutive activation of defenses in the absence of pathogen infection. Its product was shown to display red chlorophyll catabolite reductase (RCCR), which catalyzes one step in the breakdown of the porphyrin component of chlorophyll. The enzyme was further assessed to be a Type-1 (pFCC-1-producing) RCCR.Upon P. syringae infection, ACD2 localization shifts from being largely in chloroplasts to partitioning to chloroplasts, mitochondria, and to a small extent, cytosol. Overexpression of ACD2 delayed cell death and the replication of P. syringae.
Computational
Description (TAIR10)
ACCELERATED CELL DEATH 2 (ACD2); FUNCTIONS IN: red chlorophyll catabolite reductase activity; INVOLVED IN: chlorophyll catabolic process, defense response, incompatible interaction, regulation of programmed cell death, regulation of plant-type hypersensitive response; LOCATED IN: in 6 components; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Red chlorophyll catabolite reductase (InterPro:IPR009439); Has 181 Blast hits to 181 proteins in 30 species: Archae - 0; Bacteria - 8; Metazoa - 0; Fungi - 0; Plants - 170; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT4G37000-MONOMERBioCyc:MetaCyc:AT4G37000-MONOMERBioGrid:15135BRENDA:1.3.1.80
EC:1.3.7.12eggNOG:ENOG410IJWIeggNOG:ENOG4111JQPEMBL:AF326347
EMBL:AL161590EMBL:AY045578EMBL:AY085797EMBL:AY093785
EMBL:CP002687EMBL:Z99707EnsemblPlants:AT4G37000EnsemblPlants:AT4G37000.1
entrez:829854EvolutionaryTrace:Q8LDU4GeneID:829854Genevisible:Q8LDU4
GO:GO:0005737GO:GO:0005739GO:GO:0005829GO:GO:0009507
GO:GO:0009535GO:GO:0009570GO:GO:0009814GO:GO:0009941
GO:GO:0010363GO:GO:0015996GO:GO:0043067GO:GO:0051743
Gramene:AT4G37000.1gramene_pathway:1.3.1.80gramene_pathway:PWY-5098hmmpanther:PTHR34685
hmmpanther:PTHR34685:SF2HOGENOM:HOG000243411InParanoid:Q8LDU4IntAct:Q8LDU4
InterPro:IPR009439KEGG:00860+1.3.1.80KEGG:ath:AT4G37000KO:K13545
ncoils:CoilOMA:DAPNFLIPaxDb:Q8LDU4PDB:2ZXK
PDB:2ZXLPDB:3AGAPDB:3AGBPDB:3AGC
PDBsum:2ZXKPDBsum:2ZXLPDBsum:3AGAPDBsum:3AGB
PDBsum:3AGCPfam:PF06405Pfam:Q8LDU4PhylomeDB:Q8LDU4
PIR:A85437PRIDE:Q8LDU4PRO:PR:Q8LDU4ProteinModelPortal:Q8LDU4
Proteomes:UP000006548RefSeq:NP_195417.1SMR:Q8LDU4STRING:3702.AT4G37000.1
TAIR:AT4G37000tair10-symbols:ACD2tair10-symbols:ATRCCRUniGene:At.4644
UniGene:At.69554UniPathway:UPA00674UniProt:Q8LDU4
Coordinates (TAIR10) chr4:+:17442627..17443762
Molecular Weight (calculated) 36450.50 Da
IEP (calculated) 5.90
GRAVY (calculated) -0.40
Length 319 amino acids
Sequence (TAIR10)
(BLAST)
001: MAMIFCNTLY SSSSPSYLSP LTSKPSRFSK NLRPRAQFQS MEDHDDHLRR KFMEFPYVSP TRKQLMVDLM STVENRLQSQ LLPCNLPPDV RNFNNPNGSA
101: EASLHIRSGD KSSPIDFVIG SWIHCKIPTG VSLNITSISG FLNSSTKAPN FVVELIQSSS KSLVLILDLP HRKDLVLNPD YLKEYYQDTA LDSHRQSLLK
201: LPEVNPYVSP SLFVRSAFSP TASMLKIDAE EEDKLEEILR DHVSPAAKEV LEVWLERCVK EEEEKIVVGE EERMELERRD KSFRRKSIED DLDLQFPRMF
301: GEEVSSRVVH AIKEAFGVL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)