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AT2G45740.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
peroxisome 1.000
ASURE: peroxisome
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31932409 (2020): plastid
  • PMID:31615849 (2019): plastid plastid thylakoid
  • PMID:31520498 (2020): mitochondrion
  • PMID:31023727 (2019): mitochondrion
  • PMID:30962257 (2019): plastid
  • PMID:27943495 (2017): mitochondrion
  • PMID:25900983 (2015): Golgi Golgi apparatus Golgi membrane
  • PMID:25900983 (2015): plant-type vacuole plant-type vacuole membrane
  • PMID:25900983 (2015): Golgi
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:25900983 (2015): Golgi trans-Golgi network early endosome
  • PMID:25641898 (2015): plasma membrane
  • PMID:24872594 (2014): plastid
  • PMID:24130194 (2013): peroxisome
  • PMID:23673981 (2013): plastid plastid stroma plastoglobules
  • PMID:22550958 (2012): plastid
  • PMID:21988472 (2012): plant-type vacuole plant-type vacuole membrane
  • PMID:21311031 (2011): mitochondrion
  • PMID:20061580 (2010): plastid plastid envelope
  • PMID:19334764 (2009): plasma membrane
  • PMID:19329564 (2009): peroxisome
  • PMID:18931141 (2008): peroxisome
  • PMID:18431481 (2008): plastid
  • PMID:17951448 (2007): peroxisome
  • PMID:15276431 (2004): mitochondrion
  • PMID:15028209 (2004): plastid
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : peroxin 11D
Curator
Summary (TAIR10)
member of the peroxin11 (PEX11) gene family, integral to peroxisome membrane, controls peroxisome proliferation.
Computational
Description (TAIR10)
peroxin 11D (PEX11D); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: peroxisome fission, peroxisome organization; LOCATED IN: mitochondrion, peroxisomal membrane, peroxisome, chloroplast, integral to peroxisomal membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peroxisomal biogenesis factor 11 (InterPro:IPR008733); BEST Arabidopsis thaliana protein match is: peroxin 11E (TAIR:AT3G61070.3); Has 286 Blast hits to 286 proteins in 81 species: Archae - 0; Bacteria - 0; Metazoa - 53; Fungi - 35; Plants - 176; Viruses - 0; Other Eukaryotes - 22 (source: NCBI BLink).
Protein Annotations
BioGrid:4518eggNOG:ENOG4111NS6eggNOG:KOG4186EMBL:AC004665
EMBL:AY054520EMBL:AY084943EMBL:CP002685EnsemblPlants:AT2G45740
EnsemblPlants:AT2G45740.1EnsemblPlants:AT2G45740.2EnsemblPlants:AT2G45740.3entrez:819182
GeneID:819182Genevisible:O80845GO:GO:0005739GO:GO:0005777
GO:GO:0005779GO:GO:0007031GO:GO:0009507GO:GO:0016559
GO:GO:0042802GO:GO:0044375Gramene:AT2G45740.1Gramene:AT2G45740.2
Gramene:AT2G45740.3hmmpanther:PTHR12652hmmpanther:PTHR12652:SF16HOGENOM:HOG000029130
InParanoid:O80845InterPro:IPR008733iPTMnet:O80845KEGG:ath:AT2G45740
OMA:YRMKLQKPaxDb:O80845Pfam:O80845Pfam:PF05648
PhylomeDB:O80845PIR:T02473PRIDE:O80845PRO:PR:O80845
Proteomes:UP000006548RefSeq:NP_001031544.1RefSeq:NP_566055.1RefSeq:NP_850441.1
STRING:3702.AT2G45740.1TAIR:AT2G45740tair10-symbols:PEX11DUniGene:At.12700
UniProt:O80845
Coordinates (TAIR10) chr2:+:18839865..18841102
Molecular Weight (calculated) 25945.20 Da
IEP (calculated) 10.63
GRAVY (calculated) -0.00
Length 236 amino acids
Sequence (TAIR10)
(BLAST)
001: MGTTLDVSRA ELALVVMYLN KAEARDKLCR AIQYGSKFLS GGQPGTAQNV DKSTSLARKV FRLFKFVNDL HGLISPVPKG TPLPLVLLGK SKNALLSTFL
101: FLDQIVWLGR SGIYKNKERA ELLGRISLFC WMGSSVCTTL VEVGEMGRLS SSMKKIEKGL KNGNKYQDED YRAKLKKSNE RSLALIKSAM DIVVAAGLLQ
201: LAPTKITPRV TGAFGFITSI ISCYQLLPTR PKIKTP
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)