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AT1G03680.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
plastid 1.000
ASURE: plastid
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31975158 (2020): plastid
  • PMID:31871212 (2020): mitochondrion
  • PMID:31818904 (2020): mitochondrion
  • PMID:31615849 (2019): plastid plastid thylakoid
  • PMID:31520498 (2020): mitochondrion
  • PMID:31186290 (2019): plastid plastid stroma
  • PMID:30962257 (2019): plastid
  • PMID:30783145 (2019): extracellular region plant-type cell wall
  • PMID:30309965 (2018): plastid
  • PMID:30135097 (2018): plastid
  • PMID:29967049 (2018): plastid
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:27137770 (2016): plastid plastid stroma
  • PMID:24872594 (2014): plastid plastid stroma
  • PMID:24872594 (2014): plastid plastid envelope
  • PMID:24361574 (2014): plastid plastid stroma
  • PMID:24124904 (2013): plastid
  • PMID:23673981 (2013): plastid plastid stroma plastoglobules
  • PMID:23444301 (2013): mitochondrion mitochondrial matrix
  • PMID:23444301 (2013): mitochondrion
  • PMID:22550958 (2012): plastid
  • PMID:21988472 (2012): plant-type vacuole plant-type vacuole membrane
  • PMID:21539947 (2011): plastid plastid stroma
  • PMID:21531424 (2011): plastid
  • PMID:20423899 (2010): plastid
  • PMID:20061580 (2010): plastid plastid stroma
  • PMID:20061580 (2010): plastid plastid envelope
  • PMID:18633119 (2008): plastid plastid stroma
  • PMID:18431481 (2008): plastid plastid thylakoid
  • PMID:16923014 (2006): plastid plastid stroma
  • PMID:16648217 (2006): plastid
  • PMID:16207701 (2006): plastid
  • PMID:15028209 (2004): plastid
  • PMID:14729914 (2004): plastid
  • PMID:11826309 (2002): plastid
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : thioredoxin M-type 1
Curator
Summary (TAIR10)
encodes a chloroplast thioredoxin similar to prokaryotic thioredoxins.
Computational
Description (TAIR10)
thioredoxin M-type 1 (THM1); FUNCTIONS IN: enzyme activator activity; INVOLVED IN: response to oxidative stress, response to cold, positive regulation of catalytic activity; LOCATED IN: thylakoid, apoplast, stromule, chloroplast, chloroplast stroma; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Thioredoxin fold (InterPro:IPR012335), Thioredoxin, core (InterPro:IPR015467), Thioredoxin domain (InterPro:IPR013766), Thioredoxin, conserved site (InterPro:IPR017937), Thioredoxin (InterPro:IPR005746), Thioredoxin-like subdomain (InterPro:IPR006662), Thioredoxin-like (InterPro:IPR017936), Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis thaliana protein match is: Thioredoxin superfamily protein (TAIR:AT4G03520.1); Has 21675 Blast hits to 20380 proteins in 3008 species: Archae - 297; Bacteria - 11532; Metazoa - 2886; Fungi - 1120; Plants - 1860; Viruses - 8; Other Eukaryotes - 3972 (source: NCBI BLink).
Protein Annotations
BioGrid:24671eggNOG:COG0526eggNOG:KOG0910EMBL:AC002560
EMBL:AF095749EMBL:BT004295EMBL:BT005525EMBL:CP002684
EnsemblPlants:AT1G03680EnsemblPlants:AT1G03680.1entrez:839436Gene3D:3.40.30.10
GeneID:839436Genevisible:O48737GO:GO:0000103GO:GO:0004857
GO:GO:0006109GO:GO:0006457GO:GO:0006662GO:GO:0008047
GO:GO:0009409GO:GO:0009507GO:GO:0009570GO:GO:0009579
GO:GO:0009941GO:GO:0010319GO:GO:0015035GO:GO:0016671
GO:GO:0034599GO:GO:0043085GO:GO:0043086GO:GO:0045454
GO:GO:0048046GO:GO:0055114Gramene:AT1G03680.1hmmpanther:PTHR10438
hmmpanther:PTHR10438:SF300HOGENOM:HOG000292977InParanoid:O48737IntAct:O48737
InterPro:IPR005746InterPro:IPR012336InterPro:IPR013766InterPro:IPR017937
KEGG:ath:AT1G03680KO:K03671OMA:SEMRIASPANTHER:PTHR10438
PaxDb:O48737Pfam:O48737Pfam:PF00085Pfscan:PS51352
PhylomeDB:O48737PIR:T00893PRIDE:O48737PRO:PR:O48737
PROSITE:PS00194PROSITE:PS51352ProteinModelPortal:O48737Proteomes:UP000006548
Reactome:R-ATH-3299685RefSeq:NP_849585.1scanprosite:PS00194SMR:O48737
STRING:3702.AT1G03680.1SUPFAM:SSF52833TAIR:AT1G03680tair10-symbols:ATHM1
tair10-symbols:ATM1tair10-symbols:THM1tair10-symbols:TRX-M1TIGRfam:TIGR01068
TIGRFAMs:TIGR01068UniGene:At.20253UniProt:O48737
Coordinates (TAIR10) chr1:-:916990..917865
Molecular Weight (calculated) 19665.60 Da
IEP (calculated) 9.25
GRAVY (calculated) -0.13
Length 179 amino acids
Sequence (TAIR10)
(BLAST)
001: MAAYTCTSRP PISIRSEMRI ASSPTGSFST RQMFSVLPES SGLRTRVSLS SLSKNSRVSR LRRGVICEAQ DTATGIPVVN DSTWDSLVLK ADEPVFVDFW
101: APWCGPCKMI DPIVNELAQK YAGQFKFYKL NTDESPATPG QYGVRSIPTI MIFVNGEKKD TIIGAVSKDT LATSINKFL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)