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AT4G03520.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
plastid 1.000
ASURE: plastid
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31975158 (2020): plastid
  • PMID:31871212 (2020): mitochondrion
  • PMID:31615849 (2019): plastid plastid thylakoid
  • PMID:31520498 (2020): mitochondrion
  • PMID:31186290 (2019): plastid plastid stroma
  • PMID:30962257 (2019): plastid
  • PMID:30783145 (2019): extracellular region plant-type cell wall
  • PMID:30135097 (2018): plastid
  • PMID:29967049 (2018): plastid
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:26572690 (2016): extracellular region plant-type cell wall
  • PMID:24872594 (2014): plastid plastid stroma
  • PMID:24361574 (2014): plastid plastid stroma
  • PMID:24124904 (2013): plastid
  • PMID:23673981 (2013): plastid plastid stroma plastoglobules
  • PMID:22550958 (2012): plastid
  • PMID:21988472 (2012): plant-type vacuole plant-type vacuole membrane
  • PMID:21539947 (2011): plastid plastid stroma
  • PMID:20423899 (2010): plastid
  • PMID:20061580 (2010): plastid plastid stroma
  • PMID:18633119 (2008): plastid plastid stroma
  • PMID:18431481 (2008): plastid plastid thylakoid
  • PMID:18431481 (2008): plastid plastid stroma
  • PMID:16207701 (2006): plastid
  • PMID:15028209 (2004): plastid
  • PMID:14729914 (2004): plastid
  • PMID:11826309 (2002): plastid
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : Thioredoxin superfamily protein
Curator
Summary (TAIR10)
chloroplast localized thioredoxin, similar to prokaryotic types.
Computational
Description (TAIR10)
ATHM2; FUNCTIONS IN: enzyme activator activity; INVOLVED IN: response to oxidative stress, positive regulation of catalytic activity; LOCATED IN: thylakoid, chloroplast thylakoid membrane, chloroplast stroma, chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Thioredoxin fold (InterPro:IPR012335), Thioredoxin, core (InterPro:IPR015467), Thioredoxin domain (InterPro:IPR013766), Thioredoxin, conserved site (InterPro:IPR017937), Thioredoxin (InterPro:IPR005746), Thioredoxin-like subdomain (InterPro:IPR006662), Thioredoxin-like (InterPro:IPR017936), Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis thaliana protein match is: thioredoxin M-type 1 (TAIR:AT1G03680.1); Has 20603 Blast hits to 19509 proteins in 2977 species: Archae - 276; Bacteria - 10688; Metazoa - 2669; Fungi - 1127; Plants - 1883; Viruses - 7; Other Eukaryotes - 3953 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:GQT-2146-MONOMERBioGrid:10967eggNOG:COG0526eggNOG:KOG0910
EMBL:AC005142EMBL:AF071527EMBL:AF095750EMBL:AK221358
EMBL:AL161497EMBL:AY046001EMBL:AY079362EMBL:AY084496
EMBL:CP002687EnsemblPlants:AT4G03520EnsemblPlants:AT4G03520.1entrez:825653
ExpressionAtlas:Q9SEU8Gene3D:3.40.30.10GeneID:825653Genevisible:Q9SEU8
GO:GO:0000103GO:GO:0005829GO:GO:0006457GO:GO:0006662
GO:GO:0008047GO:GO:0009507GO:GO:0009535GO:GO:0009570
GO:GO:0009579GO:GO:0015035GO:GO:0016671GO:GO:0034599
GO:GO:0043085GO:GO:0045454GO:GO:0055114hmmpanther:PTHR10438
hmmpanther:PTHR10438:SF300HOGENOM:HOG000292977InParanoid:Q9SEU8IntAct:Q9SEU8
InterPro:IPR005746InterPro:IPR012336InterPro:IPR013766InterPro:IPR017937
iPTMnet:Q9SEU8OMA:IKFYKLNPANTHER:PTHR10438PaxDb:Q9SEU8
Pfam:PF00085Pfam:Q9SEU8Pfscan:PS51352PhylomeDB:Q9SEU8
PIR:F85044PRIDE:Q9SEU8PRO:PR:Q9SEU8PROSITE:PS00194
PROSITE:PS51352ProteinModelPortal:Q9SEU8Proteomes:UP000006548Reactome:R-ATH-3299685
RefSeq:NP_192261.1scanprosite:PS00194SMR:Q9SEU8STRING:3702.AT4G03520.1
SUPFAM:SSF52833TAIR:AT4G03520tair10-symbols:ATHM2TIGRfam:TIGR01068
TIGRFAMs:TIGR01068UniGene:At.20356UniProt:Q9SEU8
Coordinates (TAIR10) chr4:-:1562585..1564055
Molecular Weight (calculated) 20313.50 Da
IEP (calculated) 9.64
GRAVY (calculated) -0.07
Length 186 amino acids
Sequence (TAIR10)
(BLAST)
001: MAAFTCTSRP PISLRSETRI VSSSPSASSL SSRRMFAVLP ESSGLRIRLS LSPASLTSIH QPRVSRLRRA VVCEAQETTT DIQVVNDSTW DSLVLKATGP
101: VVVDFWAPWC GPCKMIDPLV NDLAQHYTGK IKFYKLNTDE SPNTPGQYGV RSIPTIMIFV GGEKKDTIIG AVPKTTLTSS LDKFLP
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)