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AT1G42960.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plastid 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31975158 (2020): plastid
  • PMID:31932409 (2020): plastid
  • PMID:31818904 (2020): mitochondrion
  • PMID:31615849 (2019): plastid plastid thylakoid
  • PMID:31520498 (2020): mitochondrion
  • PMID:31023727 (2019): mitochondrion
  • PMID:30962257 (2019): plastid
  • PMID:30135097 (2018): plastid
  • PMID:29967049 (2018): plastid
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:27137770 (2016): plastid plastid stroma
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:24872594 (2014): plastid plastid envelope plastid inner membrane
  • PMID:24124904 (2013): plastid
  • PMID:23750852 (2013): mitochondrion
  • PMID:23673981 (2013): plastid plastid stroma plastoglobules
  • PMID:22923678 (2012): plastid
  • PMID:22574745 (2012): mitochondrion
  • PMID:22550958 (2012): plastid
  • PMID:21896887 (2011): mitochondrion mitochondrial envelope mitochondrial outer membrane
  • PMID:21531424 (2011): plastid
  • PMID:21433285 (2011): plasma membrane
  • PMID:20061580 (2010): plastid plastid envelope
  • PMID:19334764 (2009): plasma membrane
  • PMID:18431481 (2008): plastid plastid thylakoid
  • PMID:16618929 (2006): unclear
  • PMID:15322131 (2004): plastid
  • PMID:15028209 (2004): plastid
  • PMID:14729914 (2004): plastid
  • PMID:12938931 (2003): plastid
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
expressed protein localized to the inner membrane of the chloroplast.
Computational
Description (TAIR10)
FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: in 7 components; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G16660.1); Has 120 Blast hits to 120 proteins in 39 species: Archae - 0; Bacteria - 43; Metazoa - 0; Fungi - 0; Plants - 77; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410J00QeggNOG:ENOG410YMENEMBL:AC068324EMBL:AF370328
EMBL:AY063118EMBL:CP002684EnsemblPlants:AT1G42960EnsemblPlants:AT1G42960.1
entrez:840894GeneID:840894GO:GO:0005739GO:GO:0009507
GO:GO:0009535GO:GO:0009536GO:GO:0009706GO:GO:0009941
GO:GO:0016020GO:GO:0016021Gramene:AT1G42960.1hmmpanther:PTHR34048
hmmpanther:PTHR34048:SF1HOGENOM:HOG000005891KEGG:ath:AT1G42960ncoils:Coil
OMA:NKLHISAPhylomeDB:Q9C7S3PIR:B96497Proteomes:UP000006548
RefSeq:NP_564482.1STRING:3702.AT1G42960.1SwissPalm:Q9C7S3TAIR:AT1G42960
TMHMM:TMhelixUniGene:At.20488UniProt:Q9C7S3
Coordinates (TAIR10) chr1:+:16125863..16127080
Molecular Weight (calculated) 17830.20 Da
IEP (calculated) 8.71
GRAVY (calculated) -0.19
Length 168 amino acids
Sequence (TAIR10)
(BLAST)
001: MASLSSTSLS LPKNSHQLHP SSGFSLNPNA RCVSVSFGLN HSNKLHISAP RTKRILTIQS AYRDDDGSGS TGLFVGGFIL GGLIVGALGC VYAPQISKAI
101: AGADRKDLMR KLPKFIYDEE KALEKTRKVL AEKIAQLNSA IDDVSSQLKS EDTPNGAALS TDEIEATA
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)