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AT5G17840.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plastid 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : DnaJ/Hsp40 cysteine-rich domain superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
DnaJ/Hsp40 cysteine-rich domain superfamily protein; FUNCTIONS IN: unfolded protein binding, heat shock protein binding; INVOLVED IN: protein folding; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Heat shock protein DnaJ, cysteine-rich domain (InterPro:IPR001305); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IYIDeggNOG:ENOG41127P6EMBL:AY056279EMBL:AY085721
EMBL:AY091430EMBL:CP002688EnsemblPlants:AT5G17840EnsemblPlants:AT5G17840.1
entrez:831652GeneID:831652Gramene:AT5G17840.1hmmpanther:PTHR15852
hmmpanther:PTHR15852:SF15IntAct:Q93ZT2InterPro:IPR001305KEGG:ath:AT5G17840
OMA:SMSEREIPhylomeDB:Q93ZT2Proteomes:UP000006548RefSeq:NP_197286.1
SMR:Q93ZT2SUPFAM:SSF57938TAIR:AT5G17840UniGene:At.26340
UniProt:Q93ZT2
Coordinates (TAIR10) chr5:-:5895879..5897055
Molecular Weight (calculated) 16422.90 Da
IEP (calculated) 7.81
GRAVY (calculated) -0.07
Length 154 amino acids
Sequence (TAIR10)
(BLAST)
001: MNSALDFAFP ATFPVKSSSV GGHRIASPGF SSRLRLCSLP PSSSIKAESC LKRDVHRQRS SLESMFCYDK PIPEEIIEEP VGLSMSEREI GDNQRCTCCE
101: AKGALLCSTC SGTGLYVDSI MESQGIIVKV RCLGCGGSGN IMCKLCGGRG HVGH
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)