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AT3G15690.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plastid 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : Single hybrid motif superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Single hybrid motif superfamily protein; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Single hybrid motif (InterPro:IPR011053), Biotin/lipoyl attachment (InterPro:IPR000089); BEST Arabidopsis thaliana protein match is: Single hybrid motif superfamily protein (TAIR:AT1G52670.1); Has 1933 Blast hits to 1932 proteins in 837 species: Archae - 0; Bacteria - 1562; Metazoa - 6; Fungi - 0; Plants - 119; Viruses - 0; Other Eukaryotes - 246 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IVTNeggNOG:ENOG41120W7EMBL:CP002686EnsemblPlants:AT3G15690
EnsemblPlants:AT3G15690.1entrez:820812ExpressionAtlas:F4J017GeneID:820812
Gramene:AT3G15690.1hmmpanther:PTHR18866hmmpanther:PTHR18866:SF99InterPro:IPR000089
InterPro:IPR011053PaxDb:F4J017Pfam:PF00364PRIDE:F4J017
ProteinModelPortal:F4J017Proteomes:UP000006548RefSeq:NP_850591.1STRING:3702.AT3G15690.2
SUPFAM:SSF51230TAIR:AT3G15690UniGene:At.5618UniProt:F4J017
Coordinates (TAIR10) chr3:+:5317108..5319383
Molecular Weight (calculated) 26445.80 Da
IEP (calculated) 9.82
GRAVY (calculated) -0.22
Length 247 amino acids
Sequence (TAIR10)
(BLAST)
001: MASCSLGVPK IKISAVDLSR VRSGSLLIPY NQRSLLRQRP VKYLSLKTTF GSVKAVQVST VPTAETSATI EVKDSKEIKS SRLNAQLVPK PSEVEALVTE
101: ICDSSSIAEF ELKLGGFRLY VARNIADNSS LQPPPTPAVT ASNATTESPE SNGSASSTSL AISKPASSAA DQGLMILQSP KVGFFRRSKT IKGKRLPSSC
201: KEKDQVKEGQ ILCYIEQLGG QFPIESDVTG EVVKILREDG GKACRIQ
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)