AT5G23240.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plastid 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : DNAJ heat shock N-terminal domain-containing protein | ||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
DNAJ heat shock N-terminal domain-containing protein; FUNCTIONS IN: unfolded protein binding, heat shock protein binding; INVOLVED IN: protein folding; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Molecular chaperone, heat shock protein, Hsp40, DnaJ (InterPro:IPR015609), Heat shock protein DnaJ, N-terminal (InterPro:IPR001623), Heat shock protein DnaJ (InterPro:IPR003095); BEST Arabidopsis thaliana protein match is: DNAJ heat shock N-terminal domain-containing protein (TAIR:AT2G42750.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:-:7826857..7828534 | ||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 51766.70 Da | ||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 9.24 | ||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.42 | ||||||||||||||||||||||||||||||||||||
| Length | 465 amino acids | ||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MTPAIFSPTT LPPSTATWPC STSQKLITVR SPLKFKCRAT SSSSSITDFD LYDLLGIDRS SDKSQIKSAY RALQKRCHPD IAGDPGHDMA IILNEAYQLL 101: SDPISRQAYD KEQAKLEELR GYTGKPIYSV WCGPETEQRA AFVDEVKCVG CLKCALCAEK TFAIETAYGR ARVVAQWADP ESKIKEAIEA CPVDCISMVE 201: RSDLAPLEFL MSKQPRGNVR IGVGNTVGER VSNVFVDVKK FQERYAKAMS RTTKETSQRE VQISAVEAIR SISNWLYWRS SPYTKPLSPE SNMSLTFTKR 301: KKAVDPDIRK LQDVVAAMKQ ADQSGRTKEK GSAYLLGEDY WSPSNAALPS SGNNNGSKAS SNPQVTRKTF PSEEKPTSRR ENRRQFRIKK FPIGTAIVAV 401: FLVQYQASYR AASELNDHIG GSLALSIVNS PWQQILLAGV TWYFIGAMLL QLVEAVQHKL EDKET |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)