suba logo
AT2G01680.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

.
SUBAcon:
plasma membrane 0.975
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : Ankyrin repeat family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Ankyrin repeat family protein; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ankyrin repeat-containing domain (InterPro:IPR020683), Ankyrin repeat (InterPro:IPR002110); BEST Arabidopsis thaliana protein match is: Ankyrin repeat family protein (TAIR:AT2G31820.1); Has 36872 Blast hits to 17947 proteins in 711 species: Archae - 48; Bacteria - 2509; Metazoa - 18623; Fungi - 3211; Plants - 2983; Viruses - 164; Other Eukaryotes - 9334 (source: NCBI BLink).
Protein Annotations
BioGrid:100eggNOG:COG0666eggNOG:KOG0504EMBL:AC006069
EMBL:AY084921EMBL:CP002685EnsemblPlants:AT2G01680EnsemblPlants:AT2G01680.1
entrez:814697Gene3D:1.25.40.20GeneID:814697Genevisible:Q9ZU96
GO:GO:0005886GO:GO:0016021Gramene:AT2G01680.1hmmpanther:PTHR24186
hmmpanther:PTHR24186:SF9HOGENOM:HOG000234376InParanoid:Q9ZU96InterPro:IPR002110
InterPro:IPR020683InterPro:IPR026961iPTMnet:Q9ZU96KEGG:ath:AT2G01680
ncoils:CoilOMA:NQKETAMPaxDb:Q9ZU96Pfam:PF00023
Pfam:PF12796Pfam:PF13962Pfam:Q9ZU96Pfscan:PS50088
Pfscan:PS50297PhylomeDB:Q9ZU96PIR:G84427PRIDE:Q9ZU96
PRO:PR:Q9ZU96PROSITE:PS50088PROSITE:PS50297ProteinModelPortal:Q9ZU96
Proteomes:UP000006548RefSeq:NP_565274.1SMART:SM00248SMR:Q9ZU96
STRING:3702.AT2G01680.1SUPFAM:SSF48403TAIR:AT2G01680TMHMM:TMhelix
UniGene:At.26721UniProt:Q9ZU96
Coordinates (TAIR10) chr2:+:306597..308427
Molecular Weight (calculated) 58836.10 Da
IEP (calculated) 8.86
GRAVY (calculated) 0.02
Length 532 amino acids
Sequence (TAIR10)
(BLAST)
001: MEMKQMKFLT HQAFFSSVRS GDLSQLQQLV DNLTGDELID ESSPCSAVAE LMSVQNDAGE TAVYISAAEN LEDIFRYLIR FSSLETVKIR SKSDMNAFHV
101: AAKRGHLGIV KELLRLWPEL CRICDASNTS PLYAAAVQDH LEIVNAMLDV DPSCAMIVRK NGKTSLHTAG RYGLLRIVKA LIEKDAAIVG VKDKKGQTAL
201: HMAVKGRSLE VVEEILQADY TILNERDRKG NTALHIATRK ARPQITSLLL TFTAIEVNAI NNQKETAMDL ADKLQYSESA LEINEALVEA GAKHGRFIGR
301: EDEARALKRA VSDIKHEVQS QLLQNEKTNR RVSGIAKELR KLHREAVQNT TNSITVVAVL FASIAFLAIF NLPGQYFTEG SHVGQANIAG RTGFRVFCLL
401: NATSLFISLA VVVVQITLVA WDTRAQKKVV SVVNKLMWAA CACTFGAFLA IAFAVVGKGN SWMAITITLL GAPILVGTLA SMCYFVFRQR FRSGNDSQRR
501: IRRGSSKSFS WSYSHHVSDF EDESDFEKII AL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)