suba logo
AT4G28570.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

.
SUBAcon:
endoplasmic reticulum 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:22923678 (2012): endoplasmic reticulum
  • PMID:19334764 (2009): plasma membrane
  • PMID:16618929 (2006): endoplasmic reticulum
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Long-chain fatty alcohol dehydrogenase family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Long-chain fatty alcohol dehydrogenase family protein; FUNCTIONS IN: electron carrier activity, oxidoreductase activity, acting on CH-OH group of donors, FAD binding; LOCATED IN: endoplasmic reticulum; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glucose-methanol-choline oxidoreductase, N-terminal (InterPro:IPR000172), Glucose-methanol-choline oxidoreductase, C-terminal (InterPro:IPR007867), Long-chain fatty alcohol dehydrogenase (InterPro:IPR012400); BEST Arabidopsis thaliana protein match is: Long-chain fatty alcohol dehydrogenase family protein (TAIR:AT1G03990.1); Has 3734 Blast hits to 3404 proteins in 773 species: Archae - 46; Bacteria - 2451; Metazoa - 41; Fungi - 246; Plants - 166; Viruses - 0; Other Eukaryotes - 784 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:GQT-559-MONOMEREC:1.1.3.20eggNOG:COG2303eggNOG:ENOG410IEI1
EMBL:AJ316231EMBL:AL161573EMBL:AY039977EMBL:BT001942
EMBL:CP002687EnsemblPlants:AT4G28570EnsemblPlants:AT4G28570.1entrez:828975
Gene3D:3.50.50.60GeneID:828975Genevisible:Q94BP3GO:GO:0005783
GO:GO:0016021GO:GO:0046577GO:GO:0050660Gramene:AT4G28570.1
hmmpanther:PTHR10668hmmpanther:PTHR10668:SF81HOGENOM:HOG000243490InParanoid:Q94BP3
InterPro:IPR000172InterPro:IPR007867InterPro:IPR012400InterPro:IPR023753
KEGG:ath:AT4G28570KO:K17756OMA:WEGGIITPaxDb:Q94BP3
Pfam:PF00732Pfam:PF05199Pfam:Q94BP3PhylomeDB:Q94BP3
PIR:T10651PIRSF:PIRSF028937PRIDE:Q94BP3PRO:PR:Q94BP3
ProteinModelPortal:Q94BP3Proteomes:UP000006548RefSeq:NP_194586.1SMR:Q94BP3
STRING:3702.AT4G28570.1SUPFAM:SSF51905TAIR:AT4G28570TMHMM:TMhelix
UniGene:At.25986UniProt:Q94BP3
Coordinates (TAIR10) chr4:+:14119548..14121923
Molecular Weight (calculated) 81964.10 Da
IEP (calculated) 7.45
GRAVY (calculated) -0.22
Length 748 amino acids
Sequence (TAIR10)
(BLAST)
001: MEDVRRRNRG HPLLRSKKRG EGYNHGFSPS QIQSLAVICQ TFLPPETTSE QQAVNSFHVA SSTQPPFTDE VAEMIVKNGR SEAVKVLRII LMILSFRFGT
101: LLLCGSLCLD KSWPFVLKFS QLPLDKREAI LRNWSRQSGF LLPFRITFFL AKFYTLFYFF SQTDENLKNP ALEAIGYCID GTERSSNKKS EADEKRRPLE
201: KGIIETMHES DVTITQSLTE KGVHVARDDG DNVYRIRCDA VVVGSGSGGG VAAANLAKAG LKVLVLEKGN YFTAHDYSGL EVPSMLELYE KGGLLTTVDG
301: KFMLLAGSAV GGGTAVNWSA SIRTPDHVLQ EWSEGSKIKF FGSQEYQSAM DEVTIRIGVT ERCVKHGFQN QVLRKGCERL GLQVESVPRN SPEDHYCGLC
401: GYGCRAGAKN GTDQTWLVDA VENGAVILTG IKAERFVLVD NTSSSNERKK RCVGVFASSV GGKIGKKFII EARVTVSSAG SLLTPPLMLS SGLKNPNIGR
501: NLKLHPVLMT WGYFPEKDSE FSGKMYEGGI ITSVHHMNDT ESGCKAILEN PLIGPASYAG LSPWVSGPDL KERMIKYGRT AHLFALVRDL GSGEVMMENE
601: VTYRTTKKDR ENLRAGLRQA LRVSVAAGAV EVGTYRSDGQ KMKCEAITKE AMEEFLDEVD AVGGVGTKGE YWTTYFSAHQ MGSCRMGVTA EEGALDENGE
701: SWEAEGLFVC DGSILPSAVG VNPMITIQST AYCISSKIVD SLQNKTKV
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)