AT3G05270.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Plant protein of unknown function (DUF869) | ||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Plant protein of unknown function (DUF869); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF869, plant (InterPro:IPR008587); BEST Arabidopsis thaliana protein match is: Plant protein of unknown function (DUF869) (TAIR:AT1G21810.1); Has 124843 Blast hits to 65585 proteins in 3211 species: Archae - 1867; Bacteria - 22851; Metazoa - 56517; Fungi - 10971; Plants - 7183; Viruses - 508; Other Eukaryotes - 24946 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:-:1500803..1502926 | ||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 69649.90 Da | ||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 5.08 | ||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.88 | ||||||||||||||||||||||||||||||||||||
| Length | 615 amino acids | ||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MDRRSWLWRR KSSEKSPGET ESTGSVSSHS ERFSDDQRSQ SPELNSKPVT REEEATADIK ILTERLSAAL LNVSLKEDLA KQHAKVAEEA VSGWEKAENE 101: AAALKQQLDA STSKVSALED RNSHLDSALK ECVRQLWQGR EEQNQKIEEA INNKCKEWET TKSQLEARIE ELQARQDVTT SSVHEDLYPK LEALEKENSA 201: LKLQLLSKSE EVKIRTIERD LSTQAAESAS KQQLEGIKKL TKLEAECRKL RVMVRRSDNS SDLKSSIDNQ SDYSGRVSFS DNEMQSPSEK IIGKSSMATS 301: VDIGLMDDFL EMEKLAALPH SEPGRKHSES NKELEKSNAH VNQLKHELKT SLRRISELEE KVEMVEVEKL QLEMALNGSK EQIEALQSRL KEIEGKLSEM 401: KKLEAENQEL ELLLGESGKQ MEDLQRQLNK AQVNLSELET RRAEKLELTM CLNGTKKQLE TSQNRLKETE RKLTELQTLL HLTKDAKEAA EDGLKAANGK 501: TEAIESRLKD VEAEAESLIL KIKSLEDVTE KERALSAKHN SKCNELQDEI SKLKQELEHH QETEPAPNHI KGFELKQEKE LAVAASKFAE CQRTIASLGQ 601: RLQSLATFED FLIES |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)