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AT2G37650.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : GRAS family transcription factor
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
GRAS family transcription factor; CONTAINS InterPro DOMAIN/s: Transcription factor GRAS (InterPro:IPR005202); BEST Arabidopsis thaliana protein match is: SCARECROW-like 14 (TAIR:AT1G07530.1); Has 2417 Blast hits to 2350 proteins in 288 species: Archae - 0; Bacteria - 4; Metazoa - 2; Fungi - 0; Plants - 2410; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IFAEeggNOG:ENOG410YMPHEMBL:AC004684EMBL:AF036306
EMBL:CP002685EnsemblPlants:AT2G37650EnsemblPlants:AT2G37650.1entrez:818342
GeneID:818342Genevisible:O80933GO:GO:0003700GO:GO:0005634
GO:GO:0006351GO:GO:0006355Gramene:AT2G37650.1hmmpanther:PTHR31636
hmmpanther:PTHR31636:SF14HOGENOM:HOG000238576InParanoid:O80933InterPro:IPR005202
iPTMnet:O80933KEGG:ath:AT2G37650OMA:FYHKDFVPaxDb:O80933
Pfam:O80933Pfam:PF03514Pfscan:PS50985PhylomeDB:O80933
PIR:T02531PIR:T51240PRIDE:O80933PRO:PR:O80933
PROSITE:PS50985ProteinModelPortal:O80933Proteomes:UP000006548RefSeq:NP_181301.1
TAIR:AT2G37650UniGene:At.26205UniGene:At.66411UniProt:O80933
Coordinates (TAIR10) chr2:+:15792623..15794779
Molecular Weight (calculated) 80919.00 Da
IEP (calculated) 6.33
GRAVY (calculated) -0.43
Length 718 amino acids
Sequence (TAIR10)
(BLAST)
001: MITEPSLTGI SGMVNRNRLS GLPDQPSSHS FTPVTLYDGF NYNLSSDHIN TVVAAPENSV FIREEEEEED PADDFDFSDA VLGYISQMLN EEDMDDKVCM
101: LQESLDLEAA ERSLYEAIGK KYPPSPERNL AFAERNSENL DRVVPGNYTG GDCIGFGNGG IKPLSSGFTL DFRNPQSCSS ILSVPQSNGL ITIYGDGIDE
201: SSKNNRENHQ SVWLFRREIE EANRFNPEEN ELIVNFREEN CVSKARKNSS RDEICVEEER SSKLPAVFGE DILRSDVVDK ILVHVPGGES MKEFNALRDV
301: LKKGVEKKKA SDAQGGKRRA RGRGRGRGRG GGGGQNGKKE VVDLRSLLIH CAQAVAADDR RCAGQLLKQI RLHSTPFGDG NQRLAHCFAN GLEARLAGTG
401: SQIYKGIVSK PRSAAAVLKA HQLFLACCPF RKLSYFITNK TIRDLVGNSQ RVHVIDFGIL YGFQWPTLIH RFSMYGSPKV RITGIEFPQP GFRPAQRVEE
501: TGQRLAAYAK LFGVPFEYKA IAKKWDAIQL EDLDIDRDEI TVVNCLYRAE NLHDESVKVE SCRDTVLNLI GKINPDLFVF GIVNGAYNAP FFVTRFREAL
601: FHFSSIFDML ETIVPREDEE RMFLEMEVFG REALNVIACE GWERVERPET YKQWHVRAMR SGLVQVPFDP SIMKTSLHKV HTFYHKDFVI DQDNRWLLQG
701: WKGRTVMALS VWKPESKA
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)