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AT3G63180.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : TIC-like
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
TIC-like (TKL); BEST Arabidopsis thaliana protein match is: time for coffee (TAIR:AT3G22380.2); Has 2025 Blast hits to 1341 proteins in 246 species: Archae - 0; Bacteria - 158; Metazoa - 691; Fungi - 375; Plants - 123; Viruses - 3; Other Eukaryotes - 675 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410JW97eggNOG:ENOG411055AEMBL:CP002686EnsemblPlants:AT3G63180
EnsemblPlants:AT3G63180.1entrez:825493ExpressionAtlas:F4J0W8GeneID:825493
Gramene:AT3G63180.1hmmpanther:PTHR34798hmmpanther:PTHR34798:SF1InParanoid:F4J0W8
OMA:RNERDVEPaxDb:F4J0W8PRIDE:F4J0W8ProteinModelPortal:F4J0W8
Proteomes:UP000006548RefSeq:NP_191877.2STRING:3702.AT3G63180.1TAIR:AT3G63180
tair10-symbols:ATTKLtair10-symbols:TKLUniGene:At.28579UniGene:At.48805
UniProt:F4J0W8
Coordinates (TAIR10) chr3:-:23336318..23340161
Molecular Weight (calculated) 105632.00 Da
IEP (calculated) 10.34
GRAVY (calculated) -0.78
Length 978 amino acids
Sequence (TAIR10)
(BLAST)
001: MDKPREARRS TTNMAASNGV TKRRQRISEN SREQMHQEVA TVRDRPGKKE RDPESFNRSK RRRSERFAPR NERDVEEDSS DESQGDDDYH QRKSFSSGRI
101: PRHAASLMVA DEMIGVPVPR KARSACLKRS HDCRTSSGSH SCEVVSPSSS TLSVKERKIV NGSKSRIPKP PKSSGTVEDD LEIEIAEVLS GLKKQPHSSK
201: RGDDSENSQK SSEVKGIKQL PAGVEICGLF TCKARFDSAN IDKSTNGAKT SLVVASDIVD EKEPRVSEGP QLENNKDESH CISKLDIHLM VPPTLPSSSG
301: RVSLLPLVSD YCKRDSALKS KEKITVKNEM NPEEVKQKKV DKRYWLNLDI EGPNQETDRD SNLRLQNLDW SQPQQAKSAP HSSVLPLPVA VASWPSGVPP
401: QGHVALIQTG KPVDESNGSS KLVQGAPISA SQPRPKRCAT HFFIARNIQL HQHFLKTNHL PTPNKGSVYL KGGDLRPTAG NPSLHGSSPI LSLNSQPHVR
501: NGDNISAPNV KASESGHFAS TRQNKPQPPP ASISVVPAPA FIYPANHHLQ PVMVPSKSSR PTKSPHLAVG LASANFSHPS SSASEVSSPY LTVIPNNAYS
601: FQLSSTIRGG TPSQAVPFYN GSFYSPQMFQ QPPQPLQRQS QAQRESKASS CSSSSHRQPQ VSVNSLSSQA NVQQHRQMSQ KFEVAGVNTD SRGSHTQKGG
701: PFGQIMAAPV QPQNFSMSFA SIASSAPPAT LNFSSNGYHI STPPGVAHQK NHQSSEAKTG GGSCSSNAED PKKNLQGKPQ GMMNGHTLVF DNPSRTLNFV
801: SGTWPPPAAT AINGDPSVFT QHLTQRQQQS GRSKMMMTHS QADSVSATSS QWKNPATSSS LTSCTSLNLK QFQSQQQIRT HGQTQISFAA PTNPQPSQGK
901: QGRSGGSSPS VTGSASHGKP ANSKVSNSKA LLLSPVPLSQ EHTENPASGS TQKNSPVCGR TVPPIITSCP GHLSELKY
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)