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AT5G17680.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
cytosol 0.997
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:24134884 (2013): cytoskeleton microtubules
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : disease resistance protein (TIR-NBS-LRR class), putative
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
disease resistance protein (TIR-NBS-LRR class), putative; FUNCTIONS IN: transmembrane receptor activity, ATP binding; INVOLVED IN: signal transduction, defense response, apoptosis, innate immune response; LOCATED IN: intrinsic to membrane; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Leucine-rich repeat, typical subtype (InterPro:IPR003591), NB-ARC (InterPro:IPR002182), Leucine-rich repeat (InterPro:IPR001611), Disease resistance protein (InterPro:IPR000767), Toll-Interleukin receptor (InterPro:IPR000157); BEST Arabidopsis thaliana protein match is: Disease resistance protein (TIR-NBS-LRR class) (TAIR:AT5G11250.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
eggNOG:COG4886eggNOG:ENOG410J6H3EMBL:CP002688EnsemblPlants:AT5G17680
EnsemblPlants:AT5G17680.1entrez:831634Gene3D:3.40.50.10140Gene3D:3.40.50.300
Gene3D:3.80.10.10GeneID:831634GO:GO:0007165GO:GO:0043531
Gramene:AT5G17680.1hmmpanther:PTHR11017hmmpanther:PTHR11017:SF20InParanoid:F4KIC7
InterPro:IPR000157InterPro:IPR002182InterPro:IPR003591InterPro:IPR011713
InterPro:IPR011991InterPro:IPR027417InterPro:IPR032675iPTMnet:F4KIC7
KEGG:ath:AT5G17680OMA:EIPARICPaxDb:F4KIC7Pfam:PF00931
Pfam:PF01582Pfam:PF07725Pfscan:PS50104PRIDE:F4KIC7
PROSITE:PS50104ProteinModelPortal:F4KIC7Proteomes:UP000006548RefSeq:NP_197270.1
SMART:SM00255SMART:SM00369SMR:F4KIC7STRING:3702.AT5G17680.1
SUPFAM:SSF46785SUPFAM:SSF52058SUPFAM:SSF52200SUPFAM:SSF52540
TAIR:AT5G17680UniGene:At.54886UniProt:F4KIC7
Coordinates (TAIR10) chr5:+:5822999..5827153
Molecular Weight (calculated) 147364.00 Da
IEP (calculated) 6.85
GRAVY (calculated) -0.16
Length 1294 amino acids
Sequence (TAIR10)
(BLAST)
0001: MASLPSSSSS SSSTVWKTDV FVSFRGEDVR KTFVSHLFCE FDRMGIKAFR DDLDLQRGKS ISPELIDAIK GSRFAIVVVS RNYAASSWCL DELLKIMECN
0101: KDTIVPIFYE VDPSDVRRQR GSFGEDVESH SDKEKVGKWK EALKKLAAIS GEDSRNWDDS KLIKKIVKDI SDKLVSTSWD DSKGLIGMSS HMDFLQSMIS
0201: IVDKDVRMLG IWGMGGVGKT TIAKYLYNQL SGQFQVHCFM ENVKEVCNRY GVRRLQVEFL CRMFQERDKE AWSSVSCCNI IKERFRHKMV FIVLDDVDRS
0301: EQLNELVKET GWFGPGSRII VTTRDRHLLL SHGINLVYKV KCLPKKEALQ LFCNYAFREE IILPHGFEEL SVQAVNYASG LPLALRVLGS FLYRRSQIEW
0401: ESTLARLKTY PHSDIMEVLR VSYDGLDEQE KAIFLYISCF YNMKQVDYVR KLLDLCGYAA EIGITILTEK SLIVESNGCV KIHDLLEQMG RELVRQQAVN
0501: NPAQRLLLWD PEDICHLLSE NSGTQLVEGI SLNLSEISEV FASDRAFEGL SNLKLLNFYD LSFDGETRVH LPNGLSYLPR KLRYLRWDGY PLKTMPSRFF
0601: PEFLVELCMS NSNLEKLWDG IQPLRNLKKM DLSRCKYLVE VPDLSKATNL EELNLSYCQS LVEVTPSIKN LKGLSCFYLT NCIQLKDIPI GIILKSLETV
0701: GMSGCSSLKH FPEISWNTRR LYLSSTKIEE LPSSISRLSC LVKLDMSDCQ RLRTLPSYLG HLVSLKSLNL DGCRRLENLP DTLQNLTSLE TLEVSGCLNV
0801: NEFPRVSTSI EVLRISETSI EEIPARICNL SQLRSLDISE NKRLASLPVS ISELRSLEKL KLSGCSVLES FPLEICQTMS CLRWFDLDRT SIKELPENIG
0901: NLVALEVLQA SRTVIRRAPW SIARLTRLQV LAIGNSFFTP EGLLHSLCPP LSRFDDLRAL SLSNMNMTEI PNSIGNLWNL LELDLSGNNF EFIPASIKRL
1001: TRLNRLNLNN CQRLQALPDE LPRGLLYIYI HSCTSLVSIS GCFNQYCLRK LVASNCYKLD QAAQILIHRN LKLESAKPEH SYFPGSDIPT CFNHQVMGPS
1101: LNIQLPQSES SSDILGFSAC IMIGVDGQYP MNNLKIHCSC ILKDADACEL VVMDEVWYPD PKAFTNMYFG SDHLLLFSRT CTSMEAYSEA LFEFSVENTE
1201: GDSFSPLGEV KKCAVHLISL KDMMQEFSND SDKIQSSDLD LPKAFDDARI LKRRAYETEF LHKEQLNPKR IKFLPVPLAR ERHSKLHQRN VIRK
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)