AT5G39970.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plasma membrane 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : catalytics | ||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
catalytics; FUNCTIONS IN: catalytic activity; INVOLVED IN: biological_process unknown; LOCATED IN: anchored to membrane; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: Soluble quinoprotein glucose/sorbosone dehydrogenase (InterPro:IPR011041), Six-bladed beta-propeller, TolB-like (InterPro:IPR011042); BEST Arabidopsis thaliana protein match is: catalytics (TAIR:AT1G74790.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:+:15998155..16000751 | ||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 75626.90 Da | ||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 4.93 | ||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.20 | ||||||||||||||||||||||||||||||||||||
| Length | 690 amino acids | ||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MGSLCSIAMF LSFLLLFLAK KSLSHPLCND LTAPFNLKQP LGFCQFNGSV CCNSLEDLKL QRQFKAFNVS GRCSPLLKSL LCSKCDPFAA ELFRVESESR 101: QVPVLCNSTV SSSKSTQSLA DIDFCATFWN ECQSLSVTNT PFASQAGDGG NITSTISEIW KSSNDFCKIF GGASDESSVC FNGQEVSFNV SKVTGPSSPS 201: GICIEKIGNG SYLNMVPHPD GSNRVFLSDQ PGKIYLVTVP AQGSGELLKI DETNPFLDLT EEVHFDAELG LLGIAFHPDF LKNGRFFASF NCDRVKWPEC 301: SGKCACNSDI DCDPAKLDSD NGATPCQYHS VISEFFTNGT YVRPVEVRRI FTMGLPFSSH HGGQILFGPK DGYLYFMMGD GGSKGDPYNF AQNKKSLLGK 401: IMRLDVNNVL DAKAMNEFQL WGNYSIPKDN PFSQDKNLLP EIWAMGVRNP WRCSFDSERP SYFLCADVGE DQYEEVDMIT KGGNYGWHYY EGTLPFHPSS 501: SSNISNSTTK IENPIFPVMW YNHSDINQQE GSSASITGGY FYRSSTDPCL YGTYLFADLY AGMIFGGAET PVGSGNFTSS HIPLQCASDS PIPCSSETEP 601: SSSSSPPIGF VFSFGEDDNK DIYLLASTGV YRIVGPSRCN FHCSLENTTS SPPSKQPDRS PPSSSFSKKL HNIGTLVVNY LAWCVLLVVI |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)