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AT1G28110.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
extracellular 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31673584 (2019): extracellular region plant-type cell wall
  • PMID:30783145 (2019): extracellular region plant-type cell wall
  • PMID:28818374 (2017): extracellular region plant-type cell wall
  • PMID:26572690 (2016): extracellular region plant-type cell wall
  • PMID:21533090 (2011): extracellular region plant-type cell wall
  • PMID:16287169 (2006): extracellular region
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : serine carboxypeptidase-like 45
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
serine carboxypeptidase-like 45 (SCPL45); FUNCTIONS IN: serine-type carboxypeptidase activity; INVOLVED IN: proteolysis; LOCATED IN: plant-type cell wall; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase S10, serine carboxypeptidase (InterPro:IPR001563), Peptidase S10, serine carboxypeptidase, active site (InterPro:IPR018202); BEST Arabidopsis thaliana protein match is: serine carboxypeptidase-like 46 (TAIR:AT2G33530.1); Has 3718 Blast hits to 3657 proteins in 439 species: Archae - 0; Bacteria - 354; Metazoa - 639; Fungi - 854; Plants - 1450; Viruses - 0; Other Eukaryotes - 421 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT1G28110-MONOMERBioCyc:ARA:GQT-511-MONOMEREC:3.4.16.-eggNOG:COG2939
eggNOG:KOG1282EMBL:AC069471EMBL:AY059854EMBL:BT008763
EMBL:CP002684EnsemblPlants:AT1G28110EnsemblPlants:AT1G28110.1EnsemblPlants:AT1G28110.2
entrez:839704ESTHER:arath-SCP45Gene3D:3.40.50.1820GeneID:839704
Genevisible:Q93Y09GO:GO:0004180GO:GO:0005576GO:GO:0009505
GO:GO:0009506GO:GO:0016747GO:GO:0019748Gramene:AT1G28110.1
Gramene:AT1G28110.2hmmpanther:PTHR11802hmmpanther:PTHR11802:SF82HOGENOM:HOG000198295
InParanoid:Q93Y09InterPro:IPR001563InterPro:IPR018202InterPro:IPR029058
InterPro:IPR033124iPTMnet:Q93Y09KEGG:ath:AT1G28110KO:K16297
MEROPS:S10.A24OMA:ELMIQYNPANTHER:PTHR11802PaxDb:Q93Y09
Pfam:PF00450Pfam:Q93Y09PhylomeDB:Q93Y09PIR:H86406
PRIDE:Q93Y09PRINTS:PR00724PRO:PR:Q93Y09PROSITE:PS00131
PROSITE:PS00560ProteinModelPortal:Q93Y09Proteomes:UP000006548RefSeq:NP_564298.1
RefSeq:NP_973926.1scanprosite:PS00131scanprosite:PS00560SMR:Q93Y09
STRING:3702.AT1G28110.1SUPFAM:SSF53474TAIR:AT1G28110tair10-symbols:SCPL45
UniGene:At.48242UniGene:At.72850UniProt:Q93Y09
Coordinates (TAIR10) chr1:-:9804153..9806832
Molecular Weight (calculated) 51805.60 Da
IEP (calculated) 7.35
GRAVY (calculated) -0.12
Length 461 amino acids
Sequence (TAIR10)
(BLAST)
001: MSPLQWLTIS FALIIFHSLT VSSSVLSHSD RVTRLPGQPR VGFQQYSGYV TVDDKKQRAL FYYFAEAETN PSSKPLVLWL NGGPGCSSLG VGAFSENGPF
101: RPKGPILVKN QHSWNQEANM LYLETPVGVG FSYSTQSSHY EGVNDKITAR DNLVFLQRWF LKFPHYLNRS LFITGESYAG HYVPQLAELM IQYNKKHHLF
201: NLRGIAIGNP VLEFATDFNS RAEYFWSHGL ISDSTYKMFT SYCNYSRYVS EYYRGSMSSM CSKVMSQVST ETSRFVDKYD VTLDVCIPSV LSQSKVVSPN
301: QVGESVDVCV EDETVNYLNR RDVQEALHAR LIGVREWTVC SNVLDYQLLD VEIPTINIVG SLVKAGVPVL VYSGDQDSVI PLTGSRTLVS RLAKQLGLRT
401: SVPYRVWFAG QQVGGWTQVY GNVLSFATVR GASHEVPFSQ PERSLVLFKA FLDGHPLPEE F
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)