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AT2G33530.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
extracellular 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31673584 (2019): extracellular region plant-type cell wall
  • PMID:30783145 (2019): extracellular region plant-type cell wall
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:28818374 (2017): extracellular region plant-type cell wall
  • PMID:28155257 (2017): extracellular region plant-type cell wall
  • PMID:24393051 (2015): extracellular region
  • PMID:21533090 (2011): extracellular region plant-type cell wall
  • PMID:16287169 (2006): extracellular region
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : serine carboxypeptidase-like 46
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
serine carboxypeptidase-like 46 (scpl46); FUNCTIONS IN: serine-type carboxypeptidase activity; INVOLVED IN: proteolysis; LOCATED IN: plant-type cell wall; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase S10, serine carboxypeptidase (InterPro:IPR001563), Peptidase S10, serine carboxypeptidase, active site (InterPro:IPR018202); BEST Arabidopsis thaliana protein match is: serine carboxypeptidase-like 45 (TAIR:AT1G28110.2); Has 3657 Blast hits to 3595 proteins in 428 species: Archae - 0; Bacteria - 306; Metazoa - 635; Fungi - 851; Plants - 1456; Viruses - 0; Other Eukaryotes - 409 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT2G33530-MONOMEREC:3.4.16.-eggNOG:COG2939eggNOG:KOG1282
EMBL:AC002332EMBL:AY074317EMBL:CP002685EnsemblPlants:AT2G33530
EnsemblPlants:AT2G33530.1entrez:817918ESTHER:arath-SCP46Gene3D:3.40.50.1820
GeneID:817918Genevisible:Q8VY01GO:GO:0004180GO:GO:0005576
GO:GO:0009505GO:GO:0009506GO:GO:0016747GO:GO:0019748
Gramene:AT2G33530.1hmmpanther:PTHR11802hmmpanther:PTHR11802:SF82HOGENOM:HOG000198295
InParanoid:Q8VY01InterPro:IPR001563InterPro:IPR018202InterPro:IPR029058
KEGG:ath:AT2G33530KO:K16297MEROPS:S10.A42OMA:DMDLVCP
PANTHER:PTHR11802PaxDb:Q8VY01Pfam:PF00450Pfam:Q8VY01
PhylomeDB:Q8VY01PIR:F84746PRIDE:Q8VY01PRINTS:PR00724
PRO:PR:Q8VY01PROSITE:PS00131ProteinModelPortal:Q8VY01Proteomes:UP000006548
RefSeq:NP_850212.1scanprosite:PS00131SMR:Q8VY01STRING:3702.AT2G33530.1
SUPFAM:SSF53474TAIR:AT2G33530tair10-symbols:scpl46UniGene:At.37914
UniGene:At.64418UniProt:Q8VY01
Coordinates (TAIR10) chr2:-:14197866..14200536
Molecular Weight (calculated) 51886.30 Da
IEP (calculated) 8.58
GRAVY (calculated) -0.07
Length 465 amino acids
Sequence (TAIR10)
(BLAST)
001: MPRLQCLTMA TSLILLLQAL SLVSSTILSR ADRITRLPGQ PRVGFQQYSG YVTIDEKKQR ALFYYLAEAE TKPISKPLVL WLNGGPGCSS LGVGAFSENG
101: PFRPKGSILV RNQHSWNQEA NMLYLETPVG VGFSYANESS SYEGVNDKIT AKDNLVFLQK WFLKFPQYLN RSLFITGESY AGHYVPQLAQ LMIQYNKKHN
201: LFNLKGIAIG NPVMEFATDF NSRAEYFWSH GLISDPTYKL FTSSCNYSRF LSEYHRGSVS SMCTKVLSQV GIETSRFIDK YDVTLDVCIP SVLSQSKVVS
301: PQPQQVGETV DVCLEDETVN YLNRRDVQKA LHARLVGTRK WTVCSDVLDY EVLDVEVPTI NIVGSLVKAG VPVFVYSGDQ DSVIPLTGSR TLVKRLAEEL
401: GLRTTVPYRV WFAGQQVGGW TQVYGNTLAF ATVRGAAHEV PFSQPARALV LFKAFLGGRP LPEEF
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)