AT1G49750.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:extracellular 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Leucine-rich repeat (LRR) family protein | ||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Leucine-rich repeat (LRR) family protein; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Leucine-rich repeat (InterPro:IPR001611); BEST Arabidopsis thaliana protein match is: Leucine-rich repeat (LRR) family protein (TAIR:AT3G19320.1); Has 196117 Blast hits to 67164 proteins in 2660 species: Archae - 391; Bacteria - 35192; Metazoa - 52079; Fungi - 12408; Plants - 67644; Viruses - 4658; Other Eukaryotes - 23745 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:-:18411177..18412779 | ||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 54410.80 Da | ||||||||||||||||||||||||||||||||
| IEP (calculated) | 8.19 | ||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.31 | ||||||||||||||||||||||||||||||||
| Length | 494 amino acids | ||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MASILSILLL ILSLSNLHFT STTGNNHIND RKSLEIIIGG GNDNNPPPSP SPEPEPEPAD CPPPPPPPPC PPPPSPPPCP PPPSPPPSPP PPQLPPPPQL 101: PPPAPPKPQP SPPTPDLPFA SSLLKKVYPV LQRFKDLVAD DKLKSWEGPD ICNKYLGLKC AIFPKTKHLA LASVQFNGLN LRGKIGKILK LDNFLDKLEE 201: VTIFHANSNG FTGSVPDFSN LKFLYELDLS NNKLTGDFPT SVLKGNNLTF LDLRFNSFSG SVPPQVFNLD LDVLFINNNN LVQKLPLNLG SITALYLTFA 301: NNRFTGPIPE SIGNIKYLQE VLFLNNKLTG CLPYQIGNLT RATVFDVGFN QLTGPIPYSF GCLETMEQLN LAGNKFYGTI PEIVCEIACL QNVSLSNNYF 401: TQVGPKCRKL IKRKIMDVSM NCILDLPNQK TPSECAKFFM RKQTCPNSKS LFTVPCDKNP NRGKPDQERL EEEKAQVSHP VTYNTLNPDR LRNL |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)