AT5G51350.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plasma membrane 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Leucine-rich repeat transmembrane protein kinase family protein | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Leucine-rich repeat transmembrane protein kinase family protein; FUNCTIONS IN: protein serine/threonine kinase activity, kinase activity, ATP binding; INVOLVED IN: transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, catalytic domain (InterPro:IPR000719), Leucine-rich repeat-containing N-terminal domain, type 2 (InterPro:IPR013210), Leucine-rich repeat (InterPro:IPR001611), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: Leucine-rich repeat protein kinase family protein (TAIR:AT5G61480.1); Has 108404 Blast hits to 45100 proteins in 1144 species: Archae - 34; Bacteria - 5225; Metazoa - 23563; Fungi - 1032; Plants - 70560; Viruses - 18; Other Eukaryotes - 7972 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:-:20867860..20870621 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 98912.10 Da | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 7.03 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.03 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 895 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MASSKHNKLC SFFYLCLFLT LVAAAEPQTE SLLTLKSQLT DNFNSLKDWF INTPEVSDNL VACCSWSGVR CNQNSTSVVS VDLSSKNLAG SLSGKEFLVF 101: TELLELNISD NSFSGEFPAE IFFNMTNLRS LDISRNNFSG RFPDGNGGDS SLKNLIFLDA LSNSFSGPLP IHLSQLENLK VLNLAGSYFT GSIPSQYGSF 201: KNLEFLHLGG NLLSGHIPQE LGNLTTLTHM EIGYNSYEGV IPWEIGYMSE LKYLDIAGAN LSGFLPKHFS NLTKLESLFL FRNHLSREIP WELGEITSLV 301: NLDLSDNHIS GTIPESFSGL KNLRLLNLMF NEMSGTLPEV IAQLPSLDTL FIWNNYFSGS LPKSLGMNSK LRWVDVSTNS FQGEIPQGIC SRGVLFKLIL 401: FSNNFTGTLS PSLSNCSTLV RIRLEDNSFS GVIPFSFSEI PDISYIDLSR NKLTGGIPLD ISKATKLDYF NISNNPELGG KLPPHIWSAP SLQNFSASSC 501: SISGGLPVFE SCKSITVIEL SNNNISGMLT PTVSTCGSLK KMDLSHNNLR GAIPSDKVFQ SMGKHAYESN ANLCGLPLKS CSAYSSRKLV SVLVACLVSI 601: LLMVVAALAL YYIRQRSQGQ WKMVSFAGLP HFTADDVLRS FGSPEPSEAV PASVSKAVLP TGITVIVRKI ELHDKKKSVV LNVLTQMGNA RHVNLVRLLG 701: FCYNNHLVYV LYDNNLHTGT TLAEKMKTKK KDWQTKKRII TGVAKGLCFL HHECLPAIPH GDVKSSNILF DDDKIEPCLG EFGFKYMLHL NTDQMNDVIR 801: VEKQKDVYNF GQLILEILTN GKLMNAGGLM IQNKPKDGLL REVYTENEVS SSDFKQGEVK RVVEVALLCI RSDQSDRPCM EDALRLLSEA ENRFK |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)