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AT5G15530.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plastid 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:30962257 (2019): plastid
  • PMID:30783145 (2019): extracellular region plant-type cell wall
  • PMID:30135097 (2018): plastid
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:27137770 (2016): plastid plastid stroma
  • PMID:24124904 (2013): plastid
  • PMID:21311031 (2011): plastid
  • PMID:20061580 (2010): plastid plastid envelope
  • PMID:20061580 (2010): plastid plastid stroma
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : biotin carboxyl carrier protein 2
Curator
Summary (TAIR10)
biotin carboxyl carrier protein isoform 2 (BCCP2) mRNA,
Computational
Description (TAIR10)
biotin carboxyl carrier protein 2 (BCCP2); FUNCTIONS IN: biotin binding; INVOLVED IN: fatty acid biosynthetic process; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Biotin-binding site (InterPro:IPR001882), Single hybrid motif (InterPro:IPR011053), Acetyl-CoA biotin carboxyl carrier (InterPro:IPR001249), Biotin/lipoyl attachment (InterPro:IPR000089); BEST Arabidopsis thaliana protein match is: chloroplastic acetylcoenzyme A carboxylase 1 (TAIR:AT5G16390.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:GQT-2156-MONOMERDIP:DIP-58513NeggNOG:COG0511eggNOG:ENOG410IWH6
EMBL:AF223948EMBL:AL391143EMBL:AY086528EMBL:BT028902
EMBL:CP002688EnsemblPlants:AT5G15530EnsemblPlants:AT5G15530.1entrez:831406
GeneID:831406Genevisible:Q9LLC1GO:GO:0003989GO:GO:0006633
GO:GO:0009317GO:GO:0009570GO:GO:0009941Gramene:AT5G15530.1
hmmpanther:PTHR23151hmmpanther:PTHR23151:SF70HOGENOM:HOG000008876InParanoid:Q9LLC1
InterPro:IPR000089InterPro:IPR001249InterPro:IPR001882InterPro:IPR011053
KEGG:ath:AT5G15530KO:K02160OMA:THIAWQRPaxDb:Q9LLC1
Pfam:PF00364Pfam:Q9LLC1Pfscan:PS50968PhylomeDB:Q9LLC1
PIR:T51531PRIDE:Q9LLC1PRINTS:PR01071PRO:PR:Q9LLC1
PROSITE:PS00188PROSITE:PS50968ProteinModelPortal:Q9LLC1Proteomes:UP000006548
RefSeq:NP_568316.1scanprosite:PS00188SMR:Q9LLC1STRING:3702.AT5G15530.1
SUPFAM:SSF51230TAIR:AT5G15530tair10-symbols:BCCP2tair10-symbols:CAC1-B
TIGRfam:TIGR00531TIGRFAMs:TIGR00531UniGene:At.20538UniGene:At.69216
UniPathway:UPA00094UniProt:Q9LLC1
Coordinates (TAIR10) chr5:+:5038955..5040437
Molecular Weight (calculated) 27281.10 Da
IEP (calculated) 7.95
GRAVY (calculated) -0.18
Length 255 amino acids
Sequence (TAIR10)
(BLAST)
001: MASLSVPCVK ICALNRRVGS LPGISTQRWQ PQPNGISFPS DVSQNHSAFW RLRATTNEVV SNSTPMTNGG YMNGKAKTNV PEPAELSEFM AKVSGLLKLV
101: DSKDIVELEL KQLDCEIVIR KKEALQQAVP PAPVYHSMPP VMADFSMPPA QPVALPPSPT PTSTPATAKP TSAPSSSHPP LKSPMAGTFY RSPGPGEPPF
201: VKVGDKVQKG QIVCIIEAMK LMNEIEAEKS GTIMELLAED GKPVSVDTPL FVIAP
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)